View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11132_low_16 (Length: 294)

Name: NF11132_low_16
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11132_low_16
NF11132_low_16
[»] chr7 (1 HSPs)
chr7 (119-217)||(18712729-18712827)
[»] chr3 (2 HSPs)
chr3 (119-217)||(16899972-16900070)
chr3 (123-217)||(1292913-1293005)
[»] chr4 (4 HSPs)
chr4 (119-217)||(34447533-34447631)
chr4 (119-217)||(13762995-13763091)
chr4 (146-217)||(50313118-50313189)
chr4 (160-217)||(11056620-11056677)
[»] chr8 (1 HSPs)
chr8 (122-217)||(42774456-42774550)
[»] chr6 (1 HSPs)
chr6 (119-217)||(5320058-5320154)
[»] chr1 (2 HSPs)
chr1 (119-217)||(23893928-23894024)
chr1 (119-217)||(125896-125994)
[»] chr5 (4 HSPs)
chr5 (162-217)||(16143799-16143854)
chr5 (162-217)||(16150979-16151033)
chr5 (162-216)||(16145924-16145978)
chr5 (162-216)||(16147954-16148008)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 18712729 - 18712827
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18712729 tacttattaatttaaaaactatatgtcatactatatttttctgataaagacaaaaataatatatcatgccataatttaaaaacaatatactatactatg 18712827  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 16899972 - 16900070
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16899972 tacttattaatttaaaaactatatgtcatactatatttttctgataaagacaaaaataatatatcatgccataatttaaaaacaatatactatactatg 16900070  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 1292913 - 1293005
Alignment:
Q  123 tattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||||||| || | | ||||||||||| || ||||||| || |  |||||||||||||||||||||||||||||||||||||||||    
T  1292913 tattaatttaaaaactatatattagactatatttttttgttaaagacgaata--atatatcatgccataatttaaaaacaatatactatactatg 1293005  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 34447533 - 34447631
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34447533 tacttattaatttaaaaactatatatcatactatatttttttgataaagacaaaaataatatatcatgccataatttaaaaacaatatactatactatg 34447631  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 13763091 - 13762995
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||| ||||||| || ||| ||||||||||| ||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||    
T  13763091 tacttattaatttcaaaactatatatcacactatatttttttgataaagacaaata--atatatcatgcaataatttaaaaacaatatactatactatg 13762995  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 50313189 - 50313118
Alignment:
Q  146 atactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  50313189 atactatatttttttgataaagacaaaggtaatatatcatgccataatttaaaaacaatatactatactatg 50313118  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 11056620 - 11056677
Alignment:
Q  160 tgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    |||||| |||||||||  ||||| |||||||||||| |||||||||||||||||||||    
T  11056620 tgataaggacaaaaatattatattatgccataattttaaaacaatatactatactatg 11056677  T

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Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 42774456 - 42774550
Alignment:
Q  122 ttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  42774456 ttattaatttaaaaactatatgtcatgctatatttttctgataaagacaaaaataatatatcatgccataattt-aaaacaatatactgtactatg 42774550  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 5320154 - 5320058
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||    
T  5320154 tacttattaatttcaaaactatatatcatactatatttttttgataaagacaaata--atatatcatgcaataatttaaaaacaatatactatactatg 5320058  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 23893928 - 23894024
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttctgataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    ||||||||||||||| ||||| || ||||||||||||||| ||||||||||  || | |||||| ||||||||||||||||||||||||||||||||||    
T  23893928 tacttattaatttaataactatatatcatactatatttttttgataaagac--aagtaatatattatgccataatttaaaaacaatatactatactatg 23894024  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 125994 - 125896
Alignment:
Q  119 tacttattaatttaaaaactacatgtcatactatatttttct--gataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactat 216  Q
    ||||||||||||| ||||||| || ||||||||||||||| |  |||||||||||| |  ||||||||||| ||||||||||||||||||||||||||||    
T  125994 tacttattaatttcaaaactatatatcatactatatttttttttgataaagacaaata--atatatcatgcaataatttaaaaacaatatactatactat 125897  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16143854 - 16143799
Alignment:
Q  162 ataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  16143854 ataaagacaacaataatatatcatgccataatttaaaaacagtatactatactatg 16143799  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16151033 - 16150979
Alignment:
Q  162 ataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactatg 217  Q
    |||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||    
T  16151033 ataaagacaacaataatatatcatgccataa-ttaaaaacagtatactatactatg 16150979  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 16145978 - 16145924
Alignment:
Q  162 ataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactat 216  Q
    |||||||||| ||| |||||| ||||||||||||||||||| | |||||||||||    
T  16145978 ataaagacaacaataatatatgatgccataatttaaaaacagtgtactatactat 16145924  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 16148008 - 16147954
Alignment:
Q  162 ataaagacaaaaattatatatcatgccataatttaaaaacaatatactatactat 216  Q
    |||||||||| ||| |||||| ||||||||||||||||||| | |||||||||||    
T  16148008 ataaagacaacaataatatatgatgccataatttaaaaacagtgtactatactat 16147954  T

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