View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_18 (Length: 263)
Name: NF11132_low_18
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 31888605 - 31888363
Alignment:
| Q |
18 |
aattggacccaaaaagctcctctttgaagtttgaacaatgcatttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttc |
117 |
Q |
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| T |
31888605 |
aattggacccaaaaagctcctctttgaagtttgaacaatgcatttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttc |
31888506 |
T |
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| Q |
118 |
atttgaaattaaaaagggaattttgatttttgaaattaaattaccaatcaatgattttaaccaattagggagaggaaggcaagaataactcatgtcatt- |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31888505 |
atttgaaattaaaaagggaattttgatttttgaaattaaattaccaatcaatgattttaaccaattagggagaggaaggcaagaataactcatgtcatta |
31888406 |
T |
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| Q |
217 |
-nnnnnnnnntctcttttcactctcaattatctctctgcttct |
258 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
31888405 |
aaaaaaaaaatctcttttcactctcaattatctctcttcttct |
31888363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 16248723 - 16248965
Alignment:
| Q |
18 |
aattggacccaaaaagctcctctttgaagtttgaacaatgcatttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttc |
117 |
Q |
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| T |
16248723 |
aattggacccaaaaagctcctctttgaagtttgaacaatgcatttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttc |
16248822 |
T |
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| Q |
118 |
atttgaaattaaaaagggaattttgatttttgaaattaaattaccaatcaatgattttaaccaattagggagaggaaggcaagaataactcatgtcatt- |
216 |
Q |
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| T |
16248823 |
atttgaaattaaaaagggaattttgatttttgaaattaaattaccaatcaatgattttaaccaattagggagaggaaggcaagaataactcatgtcatta |
16248922 |
T |
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| Q |
217 |
-nnnnnnnnntctcttttcactctcaattatctctctgcttct |
258 |
Q |
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| T |
16248923 |
aaaaaaaaaatctcttttcactctcaattatctctcttcttct |
16248965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 9809815 - 9809909
Alignment:
| Q |
59 |
atttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttcatttgaaattaaaaagggaattttgatttttgaaat |
153 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |
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| T |
9809815 |
attttttcttgttgtatcttgtagtattcccatccaatttcaacacacaaactaatttcatttggaattaaagatggaattttgattgttgaaat |
9809909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 9809907 - 9809956
Alignment:
| Q |
167 |
aatgattttaaccaattagggagaggaaggcaagaataactcatgtcatt |
216 |
Q |
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| T |
9809907 |
aatgattttaaccaattagggagagtaaggcaagaataatccatgtcatt |
9809956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 39939813 - 39939656
Alignment:
| Q |
59 |
atttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttcatttgaaattaaaaagggaattttgatttttgaaattaaat |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |||| |
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| T |
39939813 |
atttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttcatttggaattaaagatggaattttgattgttgaaatgaaat |
39939714 |
T |
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| Q |
159 |
taccaatcaatgattttaaccaattagggagaggaaggcaagaataactcatgtcatt |
216 |
Q |
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| T |
39939713 |
tgtcaatcaatgattttaacaaattagggagagtcaggcaagaataatccatgtcatt |
39939656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 29347733 - 29347595
Alignment:
| Q |
61 |
ttcttcttgttgtatcttgtagtattcccatccaattccaacacacaaactaatttcatttgaaattaaaaagggaattttgatttttgaaattaaatta |
160 |
Q |
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| T |
29347733 |
ttcttcttgttgtatcttgtagtacttccatccatttccataaaacaaattaatttaatttggaatt-------gagatttgatatttgaattgaaatta |
29347641 |
T |
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| Q |
161 |
ccaatcaatgattttaaccaattagggagaggaaggcaagaataac |
206 |
Q |
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||||||| | ||| ||| |||||||||||| |||| ||||||||| |
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| T |
29347640 |
ccaatcaggggtttcaacgaattagggagagtaaggaaagaataac |
29347595 |
T |
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