View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_23 (Length: 245)
Name: NF11132_low_23
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 29513731 - 29513940
Alignment:
| Q |
20 |
ctgttgaccttggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaaca |
119 |
Q |
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| T |
29513731 |
ctgttgaccttggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaaca |
29513830 |
T |
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| Q |
120 |
aactcgattatgtcttggctctcactgttgagaattttcttgaacgccgtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29513831 |
aactcgattatgtcttggctctcactgttgagaattttcttgaacgccgtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgc |
29513930 |
T |
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| Q |
220 |
tagggttctt |
229 |
Q |
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|||||||||| |
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| T |
29513931 |
tagggttctt |
29513940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 6900556 - 6900755
Alignment:
| Q |
30 |
tggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaacaaactcgatta |
129 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || ||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |
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| T |
6900556 |
tggatgagaagaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgatta |
6900655 |
T |
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| Q |
130 |
tgtcttggctctcactgttgagaattttcttgaacgccgtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgctagggttctt |
229 |
Q |
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| T |
6900656 |
tgtgttggctctcactgttgagaattttcttgaacgtcgtcttcagactctcgtgttcaaatctggaatggccaagtccattcatcacgctagggttctt |
6900755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 44930871 - 44930724
Alignment:
| Q |
30 |
tggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaacaaactcgatta |
129 |
Q |
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||||||| ||||| |||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
44930871 |
tggatgaaaagaaccctcgtcggatcttcgagggtgaagctcttttgaggaggatgtttaagcatggcttgcttgatgaaactcagaacaagctcgatta |
44930772 |
T |
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| Q |
130 |
tgtcttggctctcactgttgagaattttcttgaacgccgtcttcagac |
177 |
Q |
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| T |
44930771 |
tgtcttggctctcactgttgagaattttctcgagtgtcgtcttcagac |
44930724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 201157 - 201356
Alignment:
| Q |
30 |
tggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaacaaactcgatta |
129 |
Q |
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||||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |
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| T |
201157 |
tggatgagaagaaccctcgtcggatctttgaaggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgatta |
201256 |
T |
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| Q |
130 |
tgtcttggctctcactgttgagaattttcttgaacgccgtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgctagggttctt |
229 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
201257 |
tgtgttggctctcactgttgagaattttcttgaacgtcgtcttcagactcttgtgttcaaatctggcatggctaagtctattcatcatgctagggttctt |
201356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 208087 - 207889
Alignment:
| Q |
30 |
tggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaacaaactcgatta |
129 |
Q |
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||||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| |
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| T |
208087 |
tggatgagaagaaccctcgtcggatctttgaaggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacagaacaagctcgatta |
207988 |
T |
|
| Q |
130 |
tgtcttggctctcactgttgagaattttcttgaacgccgtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgctagggttct |
228 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||| |||||||||||||| |
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| T |
207987 |
tgtgttggctctcactgttgagaattttcttgaacgtcgtcttcagactcttgtgttcaaatctggcatggctaagtctattcaccatgctagggttct |
207889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 24652440 - 24652638
Alignment:
| Q |
30 |
tggatgagaagaatcctcgtcgtatctttgagggtgaagcgctgttgagaaggatgtttaagcatggtcttcttgatgaaactcagaacaaactcgatta |
129 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || ||||| || ||||| || |||||||||||||||||||| || ||||| || ||||| |
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| T |
24652440 |
tggatgagaagaatcctcgtcggatctttgagggtgaagcacttttgaggagaatgttcaaacatggtcttcttgatgaaacacaaaacaagcttgatta |
24652539 |
T |
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| Q |
130 |
tgtcttggctctcactgttgagaattttcttgaacgccgtcttcagacacttgcattcaaatctggtatggccaagtccattcatcatgctagggttct |
228 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
24652540 |
tgtgttggctctcactgttgagaattttcttgaacgtcgtcttcagactcttgtgttcaaatctggcatggctaagtctattcatcatgctagggttct |
24652638 |
T |
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