View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_25 (Length: 239)
Name: NF11132_low_25
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_25 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 4903321 - 4903542
Alignment:
| Q |
18 |
cttatcagcagggaacctctccagaaagttagctggattcgatgacttttctaaaaaccgatctttgttctctaacatgaccatcttatcaaagatagta |
117 |
Q |
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| T |
4903321 |
cttatcagcagggaacctctccaaaaagttagctggattcgatgacttttctaaaaaccgatctttgttctctaacatgaccatcttatcaaagatagta |
4903420 |
T |
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| Q |
118 |
ttcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtgaatgtattggttcggacacactctggcgcca |
217 |
Q |
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| T |
4903421 |
ttcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtgaatgtattggttcggacacactctggcgcca |
4903520 |
T |
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| Q |
218 |
tgtatccatggccagtcgaacc |
239 |
Q |
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| T |
4903521 |
tgtatccatggccagtcgaacc |
4903542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 4906708 - 4906901
Alignment:
| Q |
28 |
gggaacctctccagaaagttagctggattcgatgacttttctaaaaaccgatctttgttctctaacatgaccatcttatcaaagatagtattcttataat |
127 |
Q |
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| T |
4906708 |
gggaacctctccaaaaagttagctggattaaatgacttttctgaaaaccaatatgtgtcatctaacatgatcatcttatcgaagatggtattcttgtaat |
4906807 |
T |
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| Q |
128 |
ttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtgaatgtattggttcggacacactctggcgccatgta |
221 |
Q |
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| T |
4906808 |
ttgtgcatgctacttgaagtagaaccataccaaaggagtaaacgtcagatttatctgtgaaagtgttggttaggacatactttgctgccatgta |
4906901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 5822861 - 5822739
Alignment:
| Q |
99 |
catcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtgaatgtattggtt |
198 |
Q |
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| T |
5822861 |
catcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaaggagtaaacatcacatttatctgtgaaagtattggtt |
5822762 |
T |
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| Q |
199 |
cggacacactctggcgccatgta |
221 |
Q |
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| T |
5822761 |
cggacatactctggtgccatgta |
5822739 |
T |
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