View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_28 (Length: 215)
Name: NF11132_low_28
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 8847487 - 8847291
Alignment:
| Q |
16 |
caatcattttaaag-ttcgaatacataaaatacattttaaagagtaaggaaataccaaccaagataaaacaatacttactgttttcccttgcgagctaag |
114 |
Q |
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| T |
8847487 |
caatcattgtaaaggttccaatacataaaatacattttaaagagtaaggaaatatcaaccaagataaaacaatacttattgttttcccttgc----taag |
8847392 |
T |
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| Q |
115 |
acccaatttcaaatcagataaacaattatttacacactatcaagcatagacattcttcgaattagccgtatcctggcgacaccgacacatataattacac |
214 |
Q |
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| T |
8847391 |
tcccaatttcaaatcagataaacaattatttatacactatcaagcatagacattcttcgaattagccgtgtcctggcgacaccgacacatataattacac |
8847292 |
T |
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