View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_3 (Length: 524)
Name: NF11132_low_3
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 32502553 - 32502046
Alignment:
| Q |
1 |
ttgaccaagatagtgtctaacttgacggtcccatgaaattatactaagtgaatatagacaacatggttcttacatcgctgtcattttgaaatttcatttt |
100 |
Q |
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| T |
32502553 |
ttgaccaagatagtgtctaactcgacggtcccatgaaattatactaagtgaatatagacaacatggttcttacatcgttgtcattttgaaatttcatttt |
32502454 |
T |
|
| Q |
101 |
ggtgagttaaacatgtccatttgagtcgaccgatgcaccacgatacttaacaatgaccaccattcttgggtgactttgattgagaataccattcaattgg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
32502453 |
ggtgagttaaacgtgtccatttgagtcgaccgatgcaccacgatacttaacaatgaccaccattcttgggtcactttgattgagaataccatttaattat |
32502354 |
T |
|
| Q |
201 |
ctcttcaaattcgagattgtaacattatcattaatccaaaacaaatttagtttgtctttgttacagtaaactgcagccagattaaaattcattttcaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32502353 |
ctcttcaaattcgagattgtaacattatcattaatccaaaacaaatttagtttgtctttgttacagtaaactgcagccggattaaaattcattttcaact |
32502254 |
T |
|
| Q |
301 |
aggttataattcattttgcaactgtgttaactaggacaacagtactcaattagtttagatgcaacattaccatgcccagaacaacagtactacttgtttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32502253 |
aggttataattcattttgcaactgtgttaactaggacaacagtactcaattagtttagatgcaacattaccatgcccagaacattagtactacttgtttt |
32502154 |
T |
|
| Q |
401 |
ttgatttctcctacttttcatttcgtttcaaaacaactgtacttttataataacacgagataagtccgatgagaaaaccaggtactctctcttggaagca |
500 |
Q |
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| T |
32502153 |
ttgatttctcctacttttcatttcgtttcaaaacaactgtacttttataataacacgagataagtccgatgagaaaaccaggtactctctcttggaagca |
32502054 |
T |
|
| Q |
501 |
caccattg |
508 |
Q |
| |
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| T |
32502053 |
caccattg |
32502046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 295
Target Start/End: Original strand, 11648282 - 11648397
Alignment:
| Q |
183 |
agaataccattcaattggctcttcaaattcgagattgtaacattatcattaatccaa---aacaaatttagtttgtctttgttacagtaaactgcagcca |
279 |
Q |
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|||| |||||||| |||||||||||||| | | ||||||||||||||| || | | ||||||||||||||| | ||||| |||||||| ||| | |
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| T |
11648282 |
agaagaccattcagttggctcttcaaatcataaagtgtaacattatcattgattctaattaacaaatttagtttgccactgttatagtaaactcgagcta |
11648381 |
T |
|
| Q |
280 |
gattaaaattcatttt |
295 |
Q |
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| T |
11648382 |
ggttaaaattcatttt |
11648397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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