View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11132_low_4 (Length: 523)

Name: NF11132_low_4
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11132_low_4
NF11132_low_4
[»] chr7 (5 HSPs)
chr7 (1-506)||(24906954-24907461)
chr7 (8-93)||(2212715-2212799)
chr7 (234-309)||(18264575-18264650)
chr7 (241-314)||(23869296-23869369)
chr7 (231-299)||(24823039-24823107)
[»] chr1 (4 HSPs)
chr1 (186-506)||(31302245-31302561)
chr1 (231-299)||(25244983-25245051)
chr1 (231-309)||(25275089-25275167)
chr1 (231-299)||(46244306-46244374)
[»] chr6 (1 HSPs)
chr6 (231-309)||(26857966-26858044)
[»] chr5 (6 HSPs)
chr5 (8-70)||(11026769-11026831)
chr5 (233-309)||(8933907-8933983)
chr5 (19-102)||(24403726-24403809)
chr5 (231-309)||(5708120-5708198)
chr5 (242-299)||(9272896-9272953)
chr5 (231-299)||(10369651-10369719)
[»] scaffold0102 (1 HSPs)
scaffold0102 (231-309)||(14385-14463)
[»] chr4 (1 HSPs)
chr4 (232-314)||(41189587-41189669)
[»] chr3 (4 HSPs)
chr3 (231-289)||(9129510-9129568)
chr3 (231-289)||(9137617-9137675)
chr3 (231-285)||(34365439-34365493)
chr3 (231-299)||(41397773-41397841)
[»] chr2 (2 HSPs)
chr2 (231-309)||(17893953-17894031)
chr2 (231-309)||(43323718-43323796)


Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 24907461 - 24906954
Alignment:
Q  1 ttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaattacaatgccattcgagacatactaaaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24907461 ttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatttcttgcaactgttttgaaaattacaacgccattcgagacatactaaaaga 24907362  T
Q  101 tgcagtaacaaattataataaattattacttatcaaggaagatatcaaata--cgtaataacaatgagctcaaggaaaatgtggaaattcaaataaccaa 198  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  24907361 tgcagtaacacattataataaattattacttatcaaggaagatatcaaaaagacgtaataacaatgagctcaaggaaaatgtggaaattcaaataaccaa 24907262  T
Q  199 ccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccat 298  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907261 ccgaggtataaaatgaaagtaacgttacataagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccat 24907162  T
Q  299 ctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgccctttcgtccataatttt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907161 ctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcaactctagattataaatgggacgtttaaccttgccctttcgtccataatttt 24907062  T
Q  399 cttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaaggctgtgtactcctcatcc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24907061 cttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaaggctgcgtactcctcatcc 24906962  T
Q  499 aaggcaac 506  Q
    ||||||||    
T  24906961 aaggcaac 24906954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 2212715 - 2212799
Alignment:
Q  8 aaattgaaaagcttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaattacaatgccattcgagacatac 93  Q
    ||||||| ||||| |||||||||||||||||| |||  ||||||||||| ||  ||||||||| ||||| ||||||| | ||||||    
T  2212715 aaattgagaagctagctttcctagctttcacggcaacatgatttcttgccacaattttgaaaa-tacaacgccattctaaacatac 2212799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 18264650 - 18264575
Alignment:
Q  234 tggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    ||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  18264650 tggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 18264575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 23869369 - 23869296
Alignment:
Q  241 gtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaattttt 314  Q
    ||||||||| |||||||| ||||||| ||   |||| ||||||||| |||  ||||||| ||||||||||||||    
T  23869369 gtgatccactaaatccattatcatccgattaatccactacaaaatctatcagatccatccaccaaacaattttt 23869296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 24823107 - 24823039
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 299  Q
    |||||||||| |||||||  | |||||||  ||||||||| ||| | || |||||||||||||||||||    
T  24823107 gggtggcaatatgatccatgagatccatatccatccaatctctctactataaaatccatctaatccatc 24823039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 186 - 506
Target Start/End: Original strand, 31302245 - 31302561
Alignment:
Q  186 ttcaaataaccaaccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 285  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  31302245 ttcaaataaccaactgaggtataaaattaaagtaacgttacataagggtggcaatgtgatccaccaaatccatatccatccaatccctcgagtacaaaat 31302344  T
Q  286 ccatctaatccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgcccttt 385  Q
    ||||||||| ||||||||||||||||||||  ||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31302345 ccatctaattcatctaccaaacaatttttc--cttcttat--tagaaatgtcgttacatgcgactctagattataaatgggacgtttcaccttgcccttt 31302440  T
Q  386 cgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaaggctgt 485  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  31302441 cgtccataattttcttcttcttattagaaacgtattccacagcctctctctcagccaaatgcttacttctatttgcatataacttgcgtgttaaggctgc 31302540  T
Q  486 gtactcctcatccaaggcaac 506  Q
    |||||||||||||||||||||    
T  31302541 gtactcctcatccaaggcaac 31302561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 25244983 - 25245051
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 299  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| ||||||||    
T  25244983 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatcaaatccatc 25245051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 25275089 - 25275167
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    |||||||||| |||||||  | || ||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  25275089 gggtggcaatatgatccatgagattcatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 25275167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 46244374 - 46244306
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 299  Q
    ||||||||||  ||||||  |||||||||  ||||| |||| |||| ||||||||||||| ||||||||    
T  46244374 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 46244306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 26857966 - 26858044
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    |||||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| |||||||||| |||||||    
T  26857966 gggtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatctatcaaacaa 26858044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 11026831 - 11026769
Alignment:
Q  8 aaattgaaaagcttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaa 70  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||  | ||||||||||    
T  11026831 aaattgagaagctttctttcctagctttcacgacaacgtgatttcttgccgcagttttgaaaa 11026769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 8933983 - 8933907
Alignment:
Q  233 gtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    |||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  8933983 gtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatccatcaaacaa 8933907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 24403726 - 24403809
Alignment:
Q  19 cttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaattacaatgccattcgagacatactaaaagatg 102  Q
    |||||||||||| |||||||||||| ||||||| ||||  | |||||||||| || |||| ||||| | ||||||  |||||||    
T  24403726 cttgctttcctaactttcacgacaacgtgattttttgccgcagttttgaaaaatataatgtcattccaaacatacgtaaagatg 24403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 5708120 - 5708198
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    |||||||||| |||||||  | |||||||  |||||||||  |||| ||||||||||||| |||||||| | |||||||    
T  5708120 gggtggcaatatgatccatgagatccatatccatccaatctatccactacaaaatccatccaatccatccatcaaacaa 5708198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 9272953 - 9272896
Alignment:
Q  242 tgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 299  Q
    ||||||| || |||||||  |||||||||| |||| ||||||||||||| ||||||||    
T  9272953 tgatccatcagatccatatccatccaatccatccactacaaaatccatccaatccatc 9272896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 10369719 - 10369651
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 299  Q
    ||||||||||  ||||||  |||||||||  ||||| |||| |||| ||||||||||||| ||||||||    
T  10369719 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 10369651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 14463 - 14385
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  14463 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 41189587 - 41189669
Alignment:
Q  232 ggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaattttt 314  Q
    ||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | ||||||| ||||    
T  41189587 ggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaaatttt 41189669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 9129568 - 9129510
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 289  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9129568 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9129510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 9137675 - 9137617
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 289  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9137675 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9137617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 34365439 - 34365493
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 285  Q
    |||||||||| |||||||||||||| |||| |||||||||| | || ||||||||    
T  34365439 gggtggcaatttgatccaccaaatctataaccatccaatccattcactacaaaat 34365493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 41397773 - 41397841
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 299  Q
    ||||||||||  ||||||  |||||||||  ||||| |||| |||| ||||||||||||| ||||||||    
T  41397773 gggtggcaattagatccatgaaatccatatccatccgatccatccactacaaaatccatccaatccatc 41397841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 17893953 - 17894031
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    ||||||||||  |||||| ||||||||||  |||||||||| ||||  | || ||||||| ||||||||||||||||||    
T  17893953 gggtggcaataggatccatcaaatccatatacatccaatccatccaccataatatccatccaatccatctaccaaacaa 17894031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 43323718 - 43323796
Alignment:
Q  231 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 309  Q
    |||||||||| |||||||  | ||| |||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  43323718 gggtggcaatatgatccatgagatctatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 43323796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University