View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_7 (Length: 466)
Name: NF11132_low_7
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 116 - 381
Target Start/End: Original strand, 10520125 - 10520391
Alignment:
| Q |
116 |
tcctgttacccactaataacattacaagtggattaaatgatccacgtcagattcaaattcacttatttcaattaactccgttaacctcttcattattatt |
215 |
Q |
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| T |
10520125 |
tcctattatccactaataacattacaagtggattaaatgatccacgtcagattcaaaatcacttatttcaattaactatgttaacctcttcattattatt |
10520224 |
T |
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| Q |
216 |
caattcaacgttctaaattaagacttgcgttgacagtacactcgcttgaaggttcttctcggtgataagaaattccatgtttatcaaaagtgtggatccc |
315 |
Q |
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| T |
10520225 |
caattcaacgttctaaattaagacttccgttgacagtacactcgcttgaaggttcttcttagtgataagaaatcccatatttatcaaaagtgtggatccc |
10520324 |
T |
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| Q |
316 |
taaataacaa-tgattctttcatgagaatggaaatatcgtacatctctattccaaccacccactatt |
381 |
Q |
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| T |
10520325 |
taaataacaattgattcttccatgagaatggaaatatcgtaaatctctattccgaccacccactatt |
10520391 |
T |
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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 20250572 - 20250482
Alignment:
| Q |
118 |
ctgttacccactaataacattacaagtggattaaatgatccacgtcagattcaaattcacttatttcaattaactccgttaacctcttcattattattca |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
20250572 |
ctgttatccactaataacattacaagtggattaaatgatccacgtcagattcaaattcac---------ttaactctgttaacctcttcattattattca |
20250482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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