View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_8 (Length: 433)
Name: NF11132_low_8
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 31703722 - 31704130
Alignment:
| Q |
7 |
ggagcacagatggttgcatgcaatatgcaggttggaattgtgttttttgtatatttggtatttgattagtgatatgtttacccaaattttgatagcaagt |
106 |
Q |
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| T |
31703722 |
ggagctcagatggttgcatgcaatatgcaggttggaattgtgttttttgtatatttggtatttgattagtgatatgttaacccaaattttgatagcaagt |
31703821 |
T |
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| Q |
107 |
ttcgattacaatttacatggttaatacagttcaaatacttggttaaccatccaccaaacctatttaaccatgatttttggacatcgacatattgcatggt |
206 |
Q |
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| T |
31703822 |
ttcgattacaatttacatggttaatacagttcaaatacttggttaaccatccaccaaacctatttaaccatgatttttggacatcgacatattgcatggt |
31703921 |
T |
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| Q |
207 |
ctgtcttactctaagggactgannnnnnnatttctatgacaggggcatggcaaaccactccggttgatgcaagggatgttcaaagcgaatggagggtgtg |
306 |
Q |
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| T |
31703922 |
ctgtcttactctaagggactgatttttttatttctatgacaggggcatggcaaaccactccggttgatgcaagggatgttcaaagcgaatggagggtgtg |
31704021 |
T |
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| Q |
307 |
gttatgtgaaaaaacctgaatttctaattcaagaagttgcaaataatgaggcttttgatcctaaaagaaagttgccagcgaagcagatattaaaagtgag |
406 |
Q |
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| T |
31704022 |
gttatgtgaaaaaacctgaatttctaattcaagaagttgcaaataatgaggcttttgatcctaaaagaaagttgccagcgaagcagatattaaaagtgag |
31704121 |
T |
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| Q |
407 |
tgtaccttt |
415 |
Q |
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| T |
31704122 |
tgtaccttt |
31704130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 243 - 415
Target Start/End: Original strand, 31653772 - 31653944
Alignment:
| Q |
243 |
tgacaggggcatggcaaaccactccggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttctaattcaagaag |
342 |
Q |
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| T |
31653772 |
tgacaggggcatggcaaatcactccggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttctaattcaagaaa |
31653871 |
T |
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| Q |
343 |
ttgcaaataatgaggcttttgatcctaaaagaaagttgccagcgaagcagatattaaaagtgagtgtaccttt |
415 |
Q |
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| T |
31653872 |
ttgtacataatgaggcttttgatcctaaaagaaggttgccagtgaagcagatattaaaagtgagtgtaccttt |
31653944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 31653378 - 31653429
Alignment:
| Q |
7 |
ggagcacagatggttgcatgcaatatgcaggttggaattgtgttttttgtat |
58 |
Q |
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| T |
31653378 |
ggagctcagatggttgcattcaatatgcaggttagaattgtgtttttggtat |
31653429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 31010928 - 31010864
Alignment:
| Q |
268 |
ggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttcta |
332 |
Q |
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| T |
31010928 |
ggttgatgcaaggaatgtttaaagccaatggaggatgcggttttgttaaaaaacctgattttcta |
31010864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 31710430 - 31710494
Alignment:
| Q |
268 |
ggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttcta |
332 |
Q |
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| T |
31710430 |
ggttgatgcaaggaatgtttaaagccaatggaggatgcggttttgttaaaaaaccagattttcta |
31710494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 35509558 - 35509630
Alignment:
| Q |
262 |
cactccggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttctaat |
334 |
Q |
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| T |
35509558 |
cactctggttgatgcaaggaatgttcagagcaaatggaggatgtggttatgtaaaaaagcctgaaattctaat |
35509630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 35522877 - 35522955
Alignment:
| Q |
246 |
caggggcatggcaaaccactccggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctg |
324 |
Q |
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| T |
35522877 |
caggggcatggaaaatcactttggtatatgcaaggaatgtttagagcaaatggagggtgtggttatgtgaaaaagcctg |
35522955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 35552860 - 35552923
Alignment:
| Q |
268 |
ggttgatgcaagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctgaatttct |
331 |
Q |
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|||||||||| || ||||| | ||| |||||||||||||||||||| |||||||| || ||||| |
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| T |
35552860 |
ggttgatgcatggaatgtttagagccaatggagggtgtggttatgttaaaaaaccagattttct |
35552923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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