View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11133_high_12 (Length: 448)
Name: NF11133_high_12
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 44 - 371
Target Start/End: Original strand, 11729291 - 11729618
Alignment:
| Q |
44 |
caaattatgtggtccagaggaaagaaactaatagaaggtatgtatgttctctctaatctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11729291 |
caaattatgtggtccaaaggaaagaaactaatagaaggtatgtatgttctctctattctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
11729390 |
T |
|
| Q |
144 |
cattcttttgcaaataaattttcagtagcatctgattcaactaactctttgatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11729391 |
cattcttttgcaaataaattttcagtagcatctgattcaatttactctttaatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaa |
11729490 |
T |
|
| Q |
244 |
tttttaaaattttgttgcctcatatttactttcttaattcaagtttggtttgatttacatcgagagagaggcaagcagttgcctatatattgttactttc |
343 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11729491 |
ttttaataattttgttgcctcatatttactttcttatttaaagtttggcttgatttacatcgagagagaggcaagcagttgcctatatattgttactttc |
11729590 |
T |
|
| Q |
344 |
gctgccaatgtgaatttagtgtcagcca |
371 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
11729591 |
actgccaatgtgaatttagtgtcagcca |
11729618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 44 - 371
Target Start/End: Original strand, 23739603 - 23739930
Alignment:
| Q |
44 |
caaattatgtggtccagaggaaagaaactaatagaaggtatgtatgttctctctaatctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
143 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23739603 |
caaattatgtggtccaaaggaaagaaactaatagaaggtatgtatgttctctctattctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
23739702 |
T |
|
| Q |
144 |
cattcttttgcaaataaattttcagtagcatctgattcaactaactctttgatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23739703 |
cattcttttgcaaataaattttcagtagcatctgattcaatttactctttaatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaa |
23739802 |
T |
|
| Q |
244 |
tttttaaaattttgttgcctcatatttactttcttaattcaagtttggtttgatttacatcgagagagaggcaagcagttgcctatatattgttactttc |
343 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23739803 |
ttttaataattttgttgcctcatatttactttcttatttaaagtttggcttgatttacatcgagagagaggcaagcagttgcctatatattgttactttc |
23739902 |
T |
|
| Q |
344 |
gctgccaatgtgaatttagtgtcagcca |
371 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23739903 |
actgccaatgtgaatttagtgtcagcca |
23739930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 23739500 - 23739532
Alignment:
| Q |
17 |
gaggaaacgcaaacccatcggcgaccgcaaatt |
49 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
23739500 |
gaggaaacgcaaacccatgggcgaccgcaaatt |
23739532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 50834464 - 50834526
Alignment:
| Q |
370 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcattt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50834464 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcattt |
50834526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 50841389 - 50841327
Alignment:
| Q |
370 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcattt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50841389 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcattt |
50841327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 43043142 - 43043102
Alignment:
| Q |
46 |
aattatgtggtccagaggaaagaaactaatagaaggtatgt |
86 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
43043142 |
aattatgtagtccataggaaagaaactaatagaagatatgt |
43043102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University