View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_15 (Length: 442)
Name: NF11133_high_15
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 1380489 - 1380075
Alignment:
| Q |
8 |
aagcagagagccgaacaaaactgatatgttgcagctgaaacacacggagatggatcagaacccaggggtgcaataacattccccaagccgaaaaaatcag |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1380489 |
aagcaaagagccgaacaaaactgatatgttgcagctgaaacacacggagatggatcagaacccaggggtgcaacaacattccccaagccgaaaaaatcag |
1380390 |
T |
|
| Q |
108 |
ctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaaaacagtcgatttagta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1380389 |
ctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaaaacagtcaatttagta |
1380290 |
T |
|
| Q |
208 |
aaagttcaaatatttaagagaccaacaaccaaactagtacatttaaaccctatatgcaccagtaatataagaatatttaagagaacaacaatcttacgtc |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1380289 |
aaagttcaaatattgaagagaccaacaaccaaactagtacatttaaaccctatatgcaccagtaatataagaatatttaagagaacaacaatcttacgtc |
1380190 |
T |
|
| Q |
308 |
attgtcatttacccatgcaagagtaattgcaacaatatttctaatttctccttttcacatatatatagtcagcttttcagaaatcaaagaccagctatta |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
1380189 |
attgtcatttacccatgcaagagtaattgcaacaatatttctaatttctccttttcaca----tatagtcagcttttcataaatcaaagaccagctatta |
1380094 |
T |
|
| Q |
408 |
cagtaaaataagaacaatt |
426 |
Q |
| |
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| T |
1380093 |
cagtaaaataagaacaatt |
1380075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 82 - 426
Target Start/End: Complemental strand, 7313602 - 7313250
Alignment:
| Q |
82 |
aacattccccaagccgaaaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaat |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7313602 |
aacattccccaagccgaaaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctccaaat |
7313503 |
T |
|
| Q |
182 |
tatgcagaaaaacag------------tcgatttagtaaaagttcaaatatttaagagaccaacaaccaaactagtacatttaaaccctatatgcaccag |
269 |
Q |
| |
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|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7313502 |
tatgcagaaaaatagctaaaaaaacactcgatttagtaaaagttcgaatatttaagagaccaacaaccaaactagtacatttaaaccctatatgcaccag |
7313403 |
T |
|
| Q |
270 |
taatataagaatatttaagagaacaacaatcttacgtcattgtcatttacccatgcaagagtaattgcaacaatatttctaatttctccttttcacatat |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7313402 |
taatataagaatatttaagagaacaacaatcttacgtcattgtcatttacccatgcaagagtaattgcaacaatatttctaatttccccttttcaca--- |
7313306 |
T |
|
| Q |
370 |
atatagtcagcttttcagaaatcaaagaccagctattacagtaaaataagaacaatt |
426 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
7313305 |
-tatagtcagcttttcagaaatcaaagtccagctattacagaaaaataagaacaatt |
7313250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 267 - 407
Target Start/End: Complemental strand, 40909224 - 40909088
Alignment:
| Q |
267 |
cagtaatataagaatatttaagagaacaacaatcttacgtcattgtcatttacccatgcaagagtaattgcaacaatatttctaatttctccttttcaca |
366 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| ||||||| |||||| || || |||| |||||||||| ||||||||||||||| |||||||| |
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| T |
40909224 |
cagtaataaaagaatattcaagagaacaacaatcttatgtcattgacatttatccctgtaagaataattgcaacggtatttctaatttctcattttcaca |
40909125 |
T |
|
| Q |
367 |
tatatatagtcagcttttcagaaatcaaagaccagctatta |
407 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| ||||| |
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|
| T |
40909124 |
----tatagtcagcttttcataaatctaagtccagttatta |
40909088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 7313705 - 7313650
Alignment:
| Q |
24 |
aaaactgatatgttgcagctgaaacacacggagatggatcagaacccaggggtgcaat |
81 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7313705 |
aaaactgatatgttgcagctgaaacacac--agatggatcagaacccaggggtgcaat |
7313650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 50862572 - 50862491
Alignment:
| Q |
100 |
aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaat |
181 |
Q |
| |
|
|||||||||||| || ||||||||| || ||||||| | |||||||||||||| |||||| || ||| ||||| |||||||| |
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|
| T |
50862572 |
aaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaat |
50862491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 3082462 - 3082341
Alignment:
| Q |
267 |
cagtaatataagaatatttaagagaacaacaatcttacgtcattgtcatttacccatgcaagagtaattgcaacaatatttctaatttctccttttcaca |
366 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| ||||||| |||||| || || |||| |||||||||| ||||||||||||||| |||||||| |
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|
| T |
3082462 |
cagtaataaaagaatattcaagagaacaacaatcttatgtcattgacatttatccctgtaagaataattgcaacggtatttctaatttctcattttcaca |
3082363 |
T |
|
| Q |
367 |
tatatatagtcagcttttcagaaatc |
392 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
3082362 |
----tatagtcagcttttcataaatc |
3082341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 24455893 - 24455812
Alignment:
| Q |
100 |
aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaat |
181 |
Q |
| |
|
|||| ||||||| || ||||||||| || ||||||| | |||||||||||||| ||||||||| ||| ||||| |||||||| |
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|
| T |
24455893 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat |
24455812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 6606478 - 6606380
Alignment:
| Q |
267 |
cagtaatataagaatatttaagagaacaacaatc---ttacgtcattgtcatttacccatgcaagagtaattgcaacaatatttctaatttctcctttt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || |||| |||||||| ||||||||| |||| |||||||| |
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|
| T |
6606478 |
cagtaatataagaatatttaagagaacaacaatcttattatgtcattgacatttacccctgtaagaataattgcagcaatatttccaattcctcctttt |
6606380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 1480636 - 1480544
Alignment:
| Q |
99 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaa |
191 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| | | ||||| | ||| ||||| |||||||||||||||||| |
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|
| T |
1480636 |
aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
1480544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 19180440 - 19180348
Alignment:
| Q |
99 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaa |
191 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| | | ||||| | ||| ||||| |||||||||||||||||| |
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|
| T |
19180440 |
aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
19180348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 49233905 - 49233986
Alignment:
| Q |
100 |
aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaat |
181 |
Q |
| |
|
|||| ||||||| || ||||||||| || ||||||| | |||||||||||||| ||||||||| ||| ||||| |||||||| |
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|
| T |
49233905 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat |
49233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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