View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_17 (Length: 428)
Name: NF11133_high_17
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 2873173 - 2873390
Alignment:
| Q |
11 |
cagagagagagggataaagaaaagcacagcattgaagttgggtgggggctctcagtgtcaatttatatgtctttaaggtgacaggttgtatatatgaaga |
110 |
Q |
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| T |
2873173 |
cagagatagagggataaagaaaagcacagcattgaagttgggtgggggctc--agtgtcaatttatatgtctttaaggtgacaggttgtatatatgaaga |
2873270 |
T |
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| Q |
111 |
tttcttgtgttgtatgtgtgaaaggacatatggtaatgatgtggaattttgaaaatctgattttacaacttagtgtaaactttaaaatgcaacttagtaa |
210 |
Q |
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| T |
2873271 |
tttcttgt-----atgtgtgaaaggacatatggtaatgatgtggaaatttgaaaatctgatttaacaacttagtgtaaactttaaaatgcaacttagtaa |
2873365 |
T |
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| Q |
211 |
cttatagtaaactttgcataaatac |
235 |
Q |
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| T |
2873366 |
cttatagtaaactttgtatagatac |
2873390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 229 - 413
Target Start/End: Original strand, 2873893 - 2874076
Alignment:
| Q |
229 |
taaatactatataaattttcactcttgttattgttacatatgtggtcccagaaatagaaagattcaattcagctacagcaaaagtatccaatagttgaat |
328 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2873893 |
taaatactatatttattttcactcttgttattgttacatatgtggtcccagaaatagaaagattcaattcagctacagcaaaagtatccaatagttgaat |
2873992 |
T |
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| Q |
329 |
cttgtaaagttctgtttgtctttcattgttatcatggcttcatcacttttgggtaagtataaatctaatagttcatatttcttag |
413 |
Q |
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| T |
2873993 |
cttgtaaagttctgtttgtctttcattgttatcatggcttcatcacttttgggtaagtat-aatctaatcgttcatatttcttag |
2874076 |
T |
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