View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_18 (Length: 408)
Name: NF11133_high_18
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 12682510 - 12682116
Alignment:
| Q |
19 |
ccattgtcgtcgtttcctcagaagaagttgaagacgaacttgaattcgagaagaaatctgttgaaatgttggggaatgatgatggtgggggtgttgtagt |
118 |
Q |
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| T |
12682510 |
ccattgtcgtcgtttcctcagaagaagttgaagacgaacttgaattcgagaagaaatctgttgaaatgttggggaatgatgatggtgggggtgttgtagt |
12682411 |
T |
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| Q |
119 |
aatttgaggaatagggtttgttgttgtt---------gttgatgatggtattggtggaaaatgtgtagggttggattgtgtgtaagacattggaattgtg |
209 |
Q |
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| T |
12682410 |
aatttgaggaatagggttattagtatttatagggtttgttgatgatggtattggtggaaaatgtgtagggttggattgtgtgtaagacattggaattgtg |
12682311 |
T |
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| Q |
210 |
gttgatggaacagtggtggtaggaggtgcagatagaaatgaaggtgttgttgtaggggtgggaatagtactaatgggtggtggtgttattgaaggtgatt |
309 |
Q |
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| T |
12682310 |
gttgatggaacagtggtggtaggaggtgcagatagaaatgaaggtgttgttgtaggggtgggaatagtactaatgggtggtggtgttattgaaggtgatt |
12682211 |
T |
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| Q |
310 |
gatgcattgaagggttgttttcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttctctgcttctc |
404 |
Q |
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| T |
12682210 |
gatgcattgaagggttgttttcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttctttggttctc |
12682116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 44554487 - 44554544
Alignment:
| Q |
330 |
tcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctc |
387 |
Q |
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| T |
44554487 |
tcaagggcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctc |
44554544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 44532839 - 44532771
Alignment:
| Q |
327 |
ttttcaagggcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttct |
395 |
Q |
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| T |
44532839 |
ttttcaagtgcttgtaattgatcaaaaaatctataggtttttccttctgatttcccacttctaccttct |
44532771 |
T |
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