View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_19 (Length: 393)
Name: NF11133_high_19
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_19 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 928480 - 928103
Alignment:
| Q |
16 |
cagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928480 |
cagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttctt |
928381 |
T |
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| Q |
116 |
ttgttcacacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
928380 |
ttgttcacacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggggtaaagggattgtcacatgtgctgtga |
928281 |
T |
|
| Q |
216 |
aacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928280 |
aacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaa |
928181 |
T |
|
| Q |
316 |
agctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttag |
393 |
Q |
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| T |
928180 |
agctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttag |
928103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 924115 - 923748
Alignment:
| Q |
26 |
gatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac-- |
123 |
Q |
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| T |
924115 |
gatggcatcaacttcattgaaaatattgctaccaagtttctatggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcga |
924016 |
T |
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| Q |
124 |
----acctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaaca |
219 |
Q |
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| T |
924015 |
gttcacctggtgataaatccaggaacaaatgtgcagaacttggctatgttctaggctctaaatattggggtaaaggggttgccacttgtgttgtgaaaca |
923916 |
T |
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| Q |
220 |
aattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagct |
319 |
Q |
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| T |
923915 |
agtggttaaggttgcattctgtgagttgtcttacttggaaaggcttgaagctcttgttgatgtggaaaatgctgggtctcaaagagttttggagaaagct |
923816 |
T |
|
| Q |
320 |
ggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcat |
387 |
Q |
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| T |
923815 |
ggtttccaaaaagagggagttcttaggaaatatttggtcatgaaaggaaaaagtagagatatgatcat |
923748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 939405 - 939031
Alignment:
| Q |
16 |
cagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttctt |
115 |
Q |
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||||| |||| | ||||||| |||||| |||| |||| || ||||||||| || ||||||||||||||| |||| |||||||||||||| ||||| | |
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| T |
939405 |
cagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaacaatcgtgctattggccgtgtttct |
939306 |
T |
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| Q |
116 |
ttgt--tca----cacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtg |
209 |
Q |
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|| ||| ||||| | |||||||||||||| || |||||||||||| |||| |||| ||||||||| ||| ||||||| || | ||| | || |
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| T |
939305 |
ctgaaatcaagatcacctcatgataaaagcaggaacaaaactgcagaacttgcctatgttctagcctctaaatactggggtaaaggaatagccacgtatg |
939206 |
T |
|
| Q |
210 |
ctgtgaaacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggtttt |
309 |
Q |
| |
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|||||||||| | |||||| |||||||| ||| || || |||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
939205 |
ttgtgaaacaagtagttaaggttgcattcagtgagttgtcacacttggaaagagttgaagcttttgttgatgtggaaaatgttggatctcaaagggtttt |
939106 |
T |
|
| Q |
310 |
ggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgat |
384 |
Q |
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| T |
939105 |
ggagaaagctggtttccaaaaggagggaactcttgggaagtatttggtcatgaaaggaaaaagcagagatatgat |
939031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 175 - 390
Target Start/End: Complemental strand, 935451 - 935236
Alignment:
| Q |
175 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgatgaattttcgtacttggaaaggcttgaagctctt |
274 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||||||| |||||||| |
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| T |
935451 |
ctctaaatattggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttgcattcagtgaatttcaatccttggaaaggcttcaagctctt |
935352 |
T |
|
| Q |
275 |
gttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagca |
374 |
Q |
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|||||| |||| ||||||||||| |||| || | ||||||| |||||| ||||| ||||| ||||||||||||| | || | ||||||||||||| |
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| T |
935351 |
gttgatatggataatgttgggtcgcaaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagca |
935252 |
T |
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| Q |
375 |
gagatatgatcatgtt |
390 |
Q |
| |
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|||||||||||||||| |
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| T |
935251 |
gagatatgatcatgtt |
935236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 175 - 390
Target Start/End: Complemental strand, 925995 - 925774
Alignment:
| Q |
175 |
ctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagatt------gcattcgatgaattttcgtacttggaaaggcttgaa |
268 |
Q |
| |
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||||||||| ||| |||||||||||| ||| ||||||||||||||||| |||| | || |||||| ||||||||| || ||||||||||||||| |
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| T |
925995 |
ctctaaatactggggtaaagggattgccacgtgtgctgtgaaacaaatggttatggttacatttgcattcagtgaattttcatatttggaaaggcttgaa |
925896 |
T |
|
| Q |
269 |
gctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaa |
368 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| || | || |||| |||||| ||||| |||||| |||||| |||||| | || | ||||||| |
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| T |
925895 |
gctcttgttgatgtggataatgttgggtcacaaagagtacttgaaaaagttggttttcaaaaagagggagttcttagaaagtatgtattctttaaaggaa |
925796 |
T |
|
| Q |
369 |
aaagcagagatatgatcatgtt |
390 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
925795 |
aaagcagagatatgatcatgtt |
925774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 374
Target Start/End: Complemental strand, 940404 - 940075
Alignment:
| Q |
49 |
tatagaaagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattggctgtgttcttttgttcac------acctgaagataaaagcagg |
142 |
Q |
| |
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|||||||||||||| ||| ||||||||| |||||||| | ||||||||| |||| || || ||| ||||||| | |||| | ||| || ||||| |
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| T |
940404 |
tatagaaagcaagtatctatgttgcaaaacaatatgcctcaatgatcgtactatcgggtgagttattttgttttcgagattacct-acgatgaatgcagg |
940306 |
T |
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| Q |
143 |
aaacaatctgcagaacttggctataatctaagctctaaatattgg-tgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcattcgat |
241 |
Q |
| |
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|| ||| || ||||||||||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||||| | |||||| |||||||| | |
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| T |
940305 |
aacaaatgtgtagaacttggctatgttctaggctataaatattgggtgtaaagggatttccacatgtgctgtgaaacaagtagttaaggttgcattcagt |
940206 |
T |
|
| Q |
242 |
gaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggagggaactc |
341 |
Q |
| |
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|| ||| | || |||||||||||||| ||| | ||||||||||| |||||||||| || || ||||||||||||||||||||||||| ||| | |
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| T |
940205 |
gagtttccacacatggaaaggcttgaa--tctattagatgtggaaaacgttgggtctctgagagtgctggagaaagctggtttccaaaaggaaggagtac |
940108 |
T |
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| Q |
342 |
ttaggaagtatttggtcatgaaaggaaaaagca |
374 |
Q |
| |
|
| || |||||| || ||||||||| ||||||| |
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| T |
940107 |
tcagaaagtatctgaacatgaaagggaaaagca |
940075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 336
Target Start/End: Complemental strand, 46648277 - 46648079
Alignment:
| Q |
138 |
gcaggaaacaatctgcagaacttggctataatctaagctctaaatattggtgtaaagggattgtcacatgtgctgtgaaacaaattgttaagattgcatt |
237 |
Q |
| |
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||||||| ||||||| |||||||||||| | | ||||| || |||||| | |||||||||| |||| || ||| |||||| | ||| | |||||| |
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| T |
46648277 |
gcaggaacaaatctgctgaacttggctatgctatgagctccaagtattggggcaaagggattgccacacttgttgtcaaacaagtggttgaagctgcatt |
46648178 |
T |
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| Q |
238 |
cgatgaattttcgtacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggtttccaaaaggaggg |
336 |
Q |
| |
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| || ||| | |||||||||||||||||||||| ||||||||||||||| | | ||||| || || |||||||| |||||||| |||| |||||| |
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| T |
46648177 |
taaggagtttccatacttggaaaggcttgaagctcaagttgatgtggaaaatatggcttctcagagagtattggagaaggctggttttcaaagggaggg |
46648079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 46656492 - 46656419
Alignment:
| Q |
251 |
tacttggaaaggcttgaagctcttgttgatgtggaaaatgttgggtctcaaagggttttggagaaagctggttt |
324 |
Q |
| |
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| T |
46656492 |
tacttggagaggcttgaggctcgagttgatgtggaaaatgtggcttctcaaagggtgttggagaaggctggttt |
46656419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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