View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_2 (Length: 666)
Name: NF11133_high_2
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 13511814 - 13511410
Alignment:
| Q |
17 |
agagaacatatgtctatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagtgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13511814 |
agagaacatatgtctatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagtgtt |
13511715 |
T |
|
| Q |
117 |
caaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatcattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13511714 |
caaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatcattt |
13511615 |
T |
|
| Q |
217 |
ggcttctcccatcattaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtccttt |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13511614 |
ggcttctcccatcattaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtccttt |
13511515 |
T |
|
| Q |
317 |
agattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgat |
415 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13511514 |
agattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgtgat |
13511415 |
T |
|
| Q |
416 |
tattg |
420 |
Q |
| |
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||||| |
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| T |
13511414 |
tattg |
13511410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 13601345 - 13600941
Alignment:
| Q |
17 |
agagaacatatgtctatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagtgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13601345 |
agagaacatatgtctatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagtgtt |
13601246 |
T |
|
| Q |
117 |
caaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatcattg |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13601245 |
caaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatcattt |
13601146 |
T |
|
| Q |
217 |
ggcttctcccatcattaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtccttt |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13601145 |
ggcttctcccatcattaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtccttt |
13601046 |
T |
|
| Q |
317 |
agattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgat |
415 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13601045 |
agattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgtgat |
13600946 |
T |
|
| Q |
416 |
tattg |
420 |
Q |
| |
|
||||| |
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|
| T |
13600945 |
tattg |
13600941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 487 - 649
Target Start/End: Complemental strand, 13511343 - 13511179
Alignment:
| Q |
487 |
agtcaacgtctcagtttattctccaatttcctttacaattctcttatggtgtttccttcaaattatgttattaatatta--ttttttgctttacagaaca |
584 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
13511343 |
agtcaacgtctcagtttattccccaatttcctttacaattctcttatggtgtttccttcaaattatgttattaattttattttttttgctttacagaaca |
13511244 |
T |
|
| Q |
585 |
aggtggtttttagaacatttgatgtcttcggtagaactaaaggttcgggttcgtaaatagaattt |
649 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
13511243 |
aggtggtttttagaacatctgatgtcttcggtagaacttaaggttcgggttcgtaaacagaattt |
13511179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 487 - 649
Target Start/End: Complemental strand, 13600874 - 13600710
Alignment:
| Q |
487 |
agtcaacgtctcagtttattctccaatttcctttacaattctcttatggtgtttccttcaaattatgttattaatatta--ttttttgctttacagaaca |
584 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
13600874 |
agtcaacgtctcagtttattccccaatttcctttacaattctcttatggtgtttccttcaaattatgttattaattttattttttttgctttacagaaca |
13600775 |
T |
|
| Q |
585 |
aggtggtttttagaacatttgatgtcttcggtagaactaaaggttcgggttcgtaaatagaattt |
649 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
13600774 |
aggtggtttttagaacatctgatgtcttcggtagaacttaaggttcgggttcgtaaacagaattt |
13600710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 16798926 - 16798835
Alignment:
| Q |
328 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
418 |
Q |
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|
||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
16798926 |
attatcgcggcccaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactctgattat |
16798835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 16840277 - 16840186
Alignment:
| Q |
328 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
418 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
16840277 |
attatcgcggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgattctgattat |
16840186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 492 - 602
Target Start/End: Original strand, 17585157 - 17585268
Alignment:
| Q |
492 |
acgtctcagtttattctccaatttcctttacaattctcttatggtgtttccttcaaattatgttattaatattat-tttttgctttacagaacaaggtgg |
590 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| ||||| ||||| || | |||||||| | ||||||| |||| |
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| T |
17585157 |
acgtctcagtttattctccaatttcctttctagttctcttattgtgtttccttcaaatcatgttgttaattttttctttttgctatccagaacatggtgc |
17585256 |
T |
|
| Q |
591 |
tttttagaacat |
602 |
Q |
| |
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|||||||||||| |
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|
| T |
17585257 |
tttttagaacat |
17585268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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