View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_high_22 (Length: 377)

Name: NF11133_high_22
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_high_22
NF11133_high_22
[»] chr3 (3 HSPs)
chr3 (17-372)||(26746720-26747074)
chr3 (30-144)||(32993309-32993423)
chr3 (267-362)||(26724650-26724747)
[»] chr7 (3 HSPs)
chr7 (24-141)||(3237923-3238040)
chr7 (30-78)||(45752731-45752779)
chr7 (50-133)||(26878301-26878386)
[»] chr6 (1 HSPs)
chr6 (24-142)||(26208605-26208723)
[»] chr1 (2 HSPs)
chr1 (27-115)||(43326460-43326548)
chr1 (30-116)||(12673273-12673359)
[»] chr4 (1 HSPs)
chr4 (27-112)||(15828421-15828506)
[»] chr2 (3 HSPs)
chr2 (27-116)||(981385-981474)
chr2 (27-91)||(42161070-42161134)
chr2 (26-108)||(27889720-27889802)
[»] chr8 (1 HSPs)
chr8 (30-85)||(40536370-40536425)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 26746720 - 26747074
Alignment:
Q  17 aaaactcaagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgt 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26746720 aaaactcaagtttgctagccagtcagcatatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgt 26746819  T
Q  117 cttatcaaggaaggaatggctccattgaaaaagtgcatccaaaccttcaatatatgctaacaggactatcccatttcattgtgaaatctgcttaacttgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26746820 cttatcaaggaaggaatggctccattgaaaaagtgcatccaaaccttcaatatatgctaacaggactatcccatttcattgtgaaatctgcttaacttgc 26746919  T
Q  217 cctccctttcttcaagctcctcataaaagaggcagccttcaagtggatcctatgaatgtgaagttggtctcacacatgtcaaacattcgttatcaagacc 316  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26746920 cctccctttcttcaagctcctcagaaaagaggcagccttcaagtggat-ctatgaatgtgaagttggtctcacacatgtcaaacattcgttatcaagacc 26747018  T
Q  317 tcatgtgctctcaagatccgaacaaggtgaaaccctacttatatctctctgctgct 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  26747019 tcatgtgctctcaagatccgaacaaggtgaaaccctacttatatctttctgttgct 26747074  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 32993423 - 32993309
Alignment:
Q  30 gctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgtcttatcaaggaag 129  Q
    |||||||| ||||||||| ||||||||||||| ||  |||||||||||| |||||| || || || ||||| | ||||||||||||    | ||| ||||    
T  32993423 gctagccaatcagcacatctgttgccttcacgacaagtgtgaataacttgagtatgccattctcgccgaaggatctcttgaatacgctgaaccaaagaag 32993324  T
Q  130 gaatggctccattga 144  Q
    |||||| ||||||||    
T  32993323 gaatggttccattga 32993309  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 26724650 - 26724747
Alignment:
Q  267 tatgaatgtgaagttggtctcacacatgtcaaacattcgttatcaagacctcatgtgctctcaagatccgaacaaggtgaaacc--ctacttatatct 362  Q
    ||||||||| |||||| ||||||| || |||||||| ||||| ||||| |||   | ||||||||| |||||||||||||| ||  ||||||||||||    
T  26724650 tatgaatgtaaagttgttctcacaaatctcaaacatgcgttaccaagaactctaattctctcaagacccgaacaaggtgaagccctctacttatatct 26724747  T

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Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 3237923 - 3238040
Alignment:
Q  24 aagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgtcttatca 123  Q
    |||||||||||||||||||||||| ||||||||||||  ||| |||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||    
T  3237923 aagtttgctagccagtcagcacatctgttgccttcacatcacgtgtgaataacttgagtatgtcaatcccgtcgaagaaactcttgaatatgtcttatca 3238022  T
Q  124 aggaaggaatggctccat 141  Q
    ||||||||||| ||||||    
T  3238023 aggaaggaatgactccat 3238040  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 45752731 - 45752779
Alignment:
Q  30 gctagccagtcagcacatttgttgccttcacgccacatgtgaataactt 78  Q
    |||||||| ||||||||| ||||||||||||| || |||||||||||||    
T  45752731 gctagccaatcagcacatatgttgccttcacgtcaaatgtgaataactt 45752779  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 26878301 - 26878386
Alignment:
Q  50 gttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttg--aatacgtcttatcaaggaaggaat 133  Q
    |||||||||||| ||  |||||||||||| | ||| |||||| ||| |||||||||||||  ||||| ||||| |||| |||||||    
T  26878301 gttgccttcacgtcaagtgtgaataacttgaatatatcaatctcgttgaagaagctcttgaaaatacatcttaccaagaaaggaat 26878386  T

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Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 26208723 - 26208605
Alignment:
Q  24 aagtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgtcttatca 123  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||    
T  26208723 aagtttgctagccagtcagcacatctgttgtcttcacgccacgtgtgaataatttgagtatgccaatcccgtcgaagaagctcttgaatacttcttgtca 26208624  T
Q  124 aggaaggaatggctccatt 142  Q
    ||||| ||||| |||||||    
T  26208623 aggaaagaatgactccatt 26208605  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 43326460 - 43326548
Alignment:
Q  27 tttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacg 115  Q
    ||||||||||| | |||||||||||||||||||||||  ||||||||||||| | |||| ||||| ||  |||| | ||||||||||||    
T  43326460 tttgctagccaatgagcacatttgttgccttcacgcctaatgtgaataacttgattatgccaatctcgctgaaggatctcttgaatacg 43326548  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 12673273 - 12673359
Alignment:
Q  30 gctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgt 116  Q
    |||||||| ||||||||| | ||||||||||||||  | |||||||||| ||||||  | || || ||||| | |||||||||||||    
T  12673273 gctagccaatcagcacatatattgccttcacgccaagtttgaataacttgagtatgcaattctcgccgaaggatctcttgaatacgt 12673359  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 15828421 - 15828506
Alignment:
Q  27 tttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaat 112  Q
    ||||||||||| ||| |||||||||||| ||||||||   |||||||||||| |||||| || || |||||||| | |||||||||    
T  15828421 tttgctagccaatcaacacatttgttgctttcacgcctagtgtgaataacttgagtatgccattctcgtcgaaggatctcttgaat 15828506  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 981474 - 981385
Alignment:
Q  27 tttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctcttgaatacgt 116  Q
    ||||||||||| ||| ||||| |||||||||||| |||  |||||||||||| ||||||||| ||  | ||||| | |||||||||||||    
T  981474 tttgctagccaatcatcacatatgttgccttcacaccaagtgtgaataacttgagtatgtcattcttgccgaaggatctcttgaatacgt 981385  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 42161070 - 42161134
Alignment:
Q  27 tttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatc 91  Q
    ||||| ||||||||| ||||| |||||||||| |||||  |||||||||||| |||||| |||||    
T  42161070 tttgccagccagtcaacacatatgttgccttcccgccaagtgtgaataacttgagtatgccaatc 42161134  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 27889720 - 27889802
Alignment:
Q  26 gtttgctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatgtcaatcccgtcgaagaagctctt 108  Q
    |||||||||||| | ||||||| ||||||||||||  ||   ||||||||||| ||||||||| || || |||| ||||||||    
T  27889720 gtttgctagccaattagcacatatgttgccttcacctcatgcgtgaataacttgagtatgtcattctcgccgaaaaagctctt 27889802  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 40536370 - 40536425
Alignment:
Q  30 gctagccagtcagcacatttgttgccttcacgccacatgtgaataacttcagtatg 85  Q
    |||||||| ||||||||| ||| ||||||||||||  |||||||||||| ||||||    
T  40536370 gctagccaatcagcacatctgtcgccttcacgccaagtgtgaataacttgagtatg 40536425  T

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