View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_23 (Length: 361)
Name: NF11133_high_23
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 29103569 - 29103903
Alignment:
| Q |
9 |
gagatgaagttatagggacctcaaattatttgatgccatgggatccaagcacatcccaaaacaatgggactaatactctaaataacaatggtgggaatat |
108 |
Q |
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| T |
29103569 |
gagatgaagttatagggacctcaaattatttgatgccatgggatccaagcacatcccaaaacaatgggactaatactctaaataacaatggtgggaatat |
29103668 |
T |
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| Q |
109 |
cacaagggatgatggaatttggacacaattcttatcagaagacttactcagtcttccaatatcttcatcatttcccaattatggatccacacctaattac |
208 |
Q |
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| T |
29103669 |
cacaagggatgatgggatttggacacagttcttatcagaagacttgctcagtcttccaatatcttcatcatttcccaattatggatccacacctaattac |
29103768 |
T |
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| Q |
209 |
cctccatccaaggtactactagttaatttcttttacaccaaaacttaatcaaatacagnnnnnnnggtgnnnnnnnntcactttaattttatgagttttt |
308 |
Q |
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| T |
29103769 |
cctccatccaaggtactactagttaatttctcttgcaccaaaacttaattaaatacagtttttttggtgaaaaaaaatcactttaattttatgagttttt |
29103868 |
T |
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| Q |
309 |
aaaaaattgtcttaattattttcaggtggatatag |
343 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29103869 |
aaaaaattgtcttaattattttcaggtggatatag |
29103903 |
T |
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