View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_high_25 (Length: 346)

Name: NF11133_high_25
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_high_25
NF11133_high_25
[»] chr1 (9 HSPs)
chr1 (1-113)||(28654819-28654934)
chr1 (1-93)||(28635538-28635630)
chr1 (265-346)||(28635790-28635870)
chr1 (1-73)||(28605370-28605442)
chr1 (119-192)||(28635630-28635703)
chr1 (1-74)||(28663221-28663294)
chr1 (276-346)||(28656308-28656377)
chr1 (261-346)||(28605878-28605960)
chr1 (214-253)||(28635752-28635791)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 28654819 - 28654934
Alignment:
Q  1 agaatgtcccttgacagtgtcatgtgctgacattgtcgctctttctgcgagagacggtattgcaatggtatgtttatg---tcatcttatacacatgcta 97  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||   ||||| |||||||||| ||    
T  28654819 agaatgtcccttgacagtgtcatgtgctgatattgttgctctttctgctagagacggtattgcaatggtatgtctatgtcatcatcatatacacatgtta 28654918  T
Q  98 ggagtcgcctctcgga 113  Q
    ||||| ||||||||||    
T  28654919 ggagttgcctctcgga 28654934  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28635538 - 28635630
Alignment:
Q  1 agaatgtcccttgacagtgtcatgtgctgacattgtcgctctttctgcgagagacggtattgcaatggtatgtttatgtcatcttatacacat 93  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  28635538 agaatgtcccttgacagtgtcatgcgctgacattgtcgctctatctgctagagacggtattgcaatggtatgtctatgtcatcatatacacat 28635630  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 28635790 - 28635870
Alignment:
Q  265 ttgatgttgaattgttggtatgttatgtatattttagttgggaggtccaaacattgaaatgaagagtggaagaagggatagc 346  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  28635790 ttgatgttgaattgttggtatgttttgtatattt-agttgggtggtccaaacattgaaatgaagagtggaagaagggatagc 28635870  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28605370 - 28605442
Alignment:
Q  1 agaatgtcccttgacagtgtcatgtgctgacattgtcgctctttctgcgagagacggtattgcaatggtatgt 73  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||||    
T  28605370 agaatgtcctttgacagtgtcatgcgctgacattgttgctctttctgctagagacggtattgccagggtatgt 28605442  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 28635630 - 28635703
Alignment:
Q  119 tcacatagtgaaacttataagtcaaatgattatccctcttaatagaataatttcttaagttgggacgtctaata 192  Q
    ||||||||||| ||| |||||||||||||||||||  |||||||||||||||| |||| |||||||| ||||||    
T  28635630 tcacatagtgagactaataagtcaaatgattatccaacttaatagaataattttttaaattgggacgcctaata 28635703  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28663221 - 28663294
Alignment:
Q  1 agaatgtcccttgacagtgtcatgtgctgacattgtcgctctttctgcgagagacggtattgcaatggtatgtt 74  Q
    |||||||||||||||||| |||||||| |||||||| |||||||| || |||||||| ||||| ||||||||||    
T  28663221 agaatgtcccttgacagtatcatgtgccgacattgttgctctttccgctagagacggaattgccatggtatgtt 28663294  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 28656308 - 28656377
Alignment:
Q  276 ttgttggtatgttatgtatattttagttgggaggtccaaacattgaaatgaagagtggaagaagggatagc 346  Q
    ||||||||  ||| ||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  28656308 ttgttggtgcgttttgtatattt-agttgggaattccaaacattgaaatgaagagtggaagaagggatagc 28656377  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 28605878 - 28605960
Alignment:
Q  261 gatgttgatgttgaattgttggtatgttatgtatattttagttgggaggtccaaacattgaaatgaagagtggaagaagggatagc 346  Q
    ||||||||||||||  |||| || |||| ||||||||  ||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  28605878 gatgttgatgttga--tgtttgtctgttctgtatatta-agttgggaggtccaaactttgaaatgaagagtggacgaaaggatagc 28605960  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 28635752 - 28635791
Alignment:
Q  214 caaagaattaccatggaaatagtatgagtaattaatattt 253  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  28635752 caaagaattaccttagaaatagtatgagtaattaatattt 28635791  T

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