View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_33 (Length: 328)
Name: NF11133_high_33
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 37600236 - 37600418
Alignment:
| Q |
130 |
agaagagcataatagaaagagaagaaagtcaaagtcaaatataaaattaatgtattatcaattgttgcatcttgtaactaggggtgagaataagtttgat |
229 |
Q |
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| T |
37600236 |
agaagagcataatagaaagagaagaaagtcaaagtcaaatataaaattaatgtattatcaattgttgcatcttgtaactaggggtgagaataaatttgat |
37600335 |
T |
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| Q |
230 |
gagtctacggtatagtctacgaactcagtttagatcagacnnnnnnnncaaaaacatataaaaccaaggcttttttataagtg |
312 |
Q |
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| T |
37600336 |
gggtctacggtctagtctacgaacttaatttagattagacttttttttcaaaaacatataaaaccaaggcttttttataagtg |
37600418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 37600088 - 37600207
Alignment:
| Q |
20 |
atcactagcaaaacgctacgacacataaactcctctgaaacactcatacaaacccttagtacacctaaattgttcaaaacaagtatatgaactacatatc |
119 |
Q |
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| T |
37600088 |
atcactagcaaaacgctacgacacataaactccactgaaacactcatacaaacccttagtacgcctaaattgttcaaaacaagtatatgaactacatatc |
37600187 |
T |
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| Q |
120 |
acaacattatagaagagcat |
139 |
Q |
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| T |
37600188 |
acaacattatagaagagcat |
37600207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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