View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_36 (Length: 313)
Name: NF11133_high_36
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38942916 - 38943215
Alignment:
| Q |
1 |
accgttgtgcctttctctttctcttctgcttttctgatgatgtggcctcctccactcatcctcttcatcttcatcttcttcatcttgtctgctggggtgg |
100 |
Q |
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| T |
38942916 |
accgttgtgcctttctctttctcttctgcttttctgatgatgtggcctc---cactcatcctcttcatcttcatcttcttcatcttgtctgctggggtgg |
38943012 |
T |
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| Q |
101 |
cgttgttgtctctctggagggctcatgatgctgagtcctccttccactttgacaatggctcccttctcctggtcttcgttcctgccttgaagtttttcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38943013 |
cgttgttgtctctctggagggctcatgatgctgagtcctccttccactttgacaatggctcccttctcctggtcttcattcctgccttgaagtttttcaa |
38943112 |
T |
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| Q |
201 |
ctatatgcctgttcacgttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttgcctccttcattttcttgttgttcccttcctctcct |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943113 |
ctatatgccttttcacgttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttgcctccttcattttcttgttgttcccttcctctcct |
38943212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 38950408 - 38950693
Alignment:
| Q |
21 |
ctcttctgcttttctgatgatgtggcctcctccactcatcctcttcatcttcatcttcttc----atcttgtctgctggggtggcgttgttgtctctctg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || || || || || || ||| ||| ||||||| |
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| T |
38950408 |
ctcttctgcttttctgatgatgtggcctcctccactcgtcctcttcatcttcatcttcctctattatgctgcctccttgg-tgacgtgattgcctctctg |
38950506 |
T |
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| Q |
117 |
gagggctcatgatgctgagtcctccttccactttgacaatggctcccttctcctggtcttcgttcctgccttgaagtttttcaactatatgcctgttcac |
216 |
Q |
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| T |
38950507 |
gtggggtaacaaagctgaggccacctctcactttgacaatggctcccttctcctcatcttcattcctgccttgaagtctgtcaactatatgcctattcac |
38950606 |
T |
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| Q |
217 |
gttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttgcctccttcattttcttgttgttcccttcctctcctttg |
303 |
Q |
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| T |
38950607 |
gttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttgcctccttcattttcttgttgttcccttcctctcctttg |
38950693 |
T |
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