View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_39 (Length: 290)
Name: NF11133_high_39
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 31616315 - 31616577
Alignment:
| Q |
20 |
gtaggatgaatggcagcatattgtaattccttaataatgatgaaaaatatatattaaacatgatgatattttgcttacaattatgattgtgttttcattt |
119 |
Q |
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| T |
31616315 |
gtaggatgaatggcagcatattgtaattccttaataatgatgaaaagtatatattaaacatgatgatattttgcttacaattatgattgtgttttcattt |
31616414 |
T |
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| Q |
120 |
gaaatgtaaaactaccattcatagtttaatgagaatattgaatgccagagcctctctgaaaagacacgtatcattgttctcagctgtcctcctgtccatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31616415 |
gaaatgtaaaactaccattcatagtttaatgagaatattgaatgccagagcctctctgaaaagacacgtatcattgttctcagctgtcctcctgtccatg |
31616514 |
T |
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| Q |
220 |
aggaaaaagtgcgtggaaacaccaggtagcctaaaacatatttttctctttcattttcatctc |
282 |
Q |
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| T |
31616515 |
aggaaaaagtgcgtggaaacaccaggtagcctaaaacatatttttctctttcattttcatctc |
31616577 |
T |
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