View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_40 (Length: 283)
Name: NF11133_high_40
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37097704 - 37097437
Alignment:
| Q |
1 |
cgatgtgcatgaaaacaacctagatacaactcaaggtgaagatcaggaattaaaagtgcagcttttacgcaagtatagtggatatctaggaagccttaag |
100 |
Q |
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| T |
37097704 |
cgatgtgcatgaaaacaacctagatacaactcaaggtgaagatcaggaattaaaagtgcagcttttacgcaagtatagtggatatctaggaagccttaag |
37097605 |
T |
|
| Q |
101 |
aaagagtttttgaagaagaaaaagaatggaaagttaccaaaggaagctcgacaacaactacttgattggtggagcaggcattacaaatggccttacccat |
200 |
Q |
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| T |
37097604 |
aaagagtttttgaagaagaaaaagaatggaaagttaccaaaggaagctcgacaacaactacttgattggtggagcaggcattacaaatggccttacccat |
37097505 |
T |
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| Q |
201 |
cggtaactaaattctacatctttcacgatttcatatatcaacaattatgccgctggaatgtttcttag |
268 |
Q |
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| T |
37097504 |
cggtaactaaattctacatctttcacgatttcatatatcaacaattatgtcactggaatgtttcttag |
37097437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 8792925 - 8792796
Alignment:
| Q |
77 |
agtggatatctaggaagccttaagaaagagtttttgaagaagaaaaagaatggaaagttaccaaaggaagctcgacaacaactacttgattggtggagca |
176 |
Q |
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|||||||| |||| || || ||| |||||||| ||||||| | || || |||||| | ||||| ||||| | |||||| | ||||| |||||||||| |
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| T |
8792925 |
agtggatacttaggcagtctgaagcaagagtttatgaagaaaaggaaaaaaggaaagcttccaaaagaagcaaggcaacaattgcttgaatggtggagca |
8792826 |
T |
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| Q |
177 |
ggcattacaaatggccttacccatcggtaa |
206 |
Q |
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| T |
8792825 |
gacattacaaatggccttacccatctgtaa |
8792796 |
T |
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