View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_57 (Length: 235)
Name: NF11133_high_57
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_57 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 7204413 - 7204630
Alignment:
| Q |
18 |
ctttacacatgcaaaggtgggatgagctgaatcattttttcaacaagacagggtgagaatctatacattatatttgttattatcgtcaccgccaccttca |
117 |
Q |
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| T |
7204413 |
ctttacacatgcaaaggtgggatgagctgaatcattttttcaacaagacagggtgagaatctatacattatatttgttattatcgtcaccgccaccttca |
7204512 |
T |
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| Q |
118 |
ctttctcttcttttaaaccaaataaaaaggataatttcaatttagtgctttcttccttataattgaagactttaggtgatttatttattttgttatttga |
217 |
Q |
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| T |
7204513 |
ctttctcttcttttaaaccaaataaaaaggatagtttcaatttagtgctttcttccttataattgaagactttaggtgatttatttattttgttatttgg |
7204612 |
T |
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| Q |
218 |
agcgattcaatgtattgt |
235 |
Q |
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| T |
7204613 |
agcgattcaatatattgt |
7204630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 7197216 - 7197433
Alignment:
| Q |
18 |
ctttacacatgcaaaggtgggatgagctgaatcattttttcaacaagacagggtgagaatctatacattatatttgttattatcgtcaccgccaccttca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
7197216 |
ctttacacatgcaaaggtgggatgagctgaatcattttttcaataagacagggtgaggatcttctcattatatttgttattatcctcaccgccaccttca |
7197315 |
T |
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| Q |
118 |
ctttctcttcttttaaaccaaataaaaaggataatttcaatttagtgctttcttccttataattgaagactttaggtgatttatttattttgttatttga |
217 |
Q |
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| T |
7197316 |
ctttctcttcttttaaatctaataaaaagtatagtttcaatttagtgctttcttccatataattgaagactttaggtgatttacttattttgttatttga |
7197415 |
T |
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| Q |
218 |
agcgattcaatgtattgt |
235 |
Q |
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| T |
7197416 |
agtgattcaatgtattgt |
7197433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 7211020 - 7211207
Alignment:
| Q |
19 |
tttacacatgcaaaggtgggatgagctgaatcattttttcaacaagacagggtgagaatctat-acattatatttgttattatcgtcaccgccaccttca |
117 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||| |
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| T |
7211020 |
tttacacatgaaaagatgggatgagctgaatcaatttttcaatcagacagggtgagaatcttttacattatatttgttattatcctcaccgccaccctca |
7211119 |
T |
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| Q |
118 |
ctttctcttcttttaaaccaaataaaaaggata--------atttcaatttagtgctttcttccttataattgaagactttaggtgatt |
198 |
Q |
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| T |
7211120 |
ctttcttttcttttaaactaaat-aaaaggatagtttcaataattcaatttagtcctttcttccttataattaaagactttaggtgatt |
7211207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 45388298 - 45388353
Alignment:
| Q |
19 |
tttacacatgcaaaggtgggatgagctgaatcattttttcaacaagacagggtgag |
74 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
45388298 |
tttacacatgaaaaggtgggatgagctgaatcattttttcaaaaatacagggtgag |
45388353 |
T |
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