View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_high_58 (Length: 229)
Name: NF11133_high_58
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_58 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 28902053 - 28902278
Alignment:
| Q |
4 |
agagaaatttgacccaaatctaatataagtgtgagcgtgagtattgaaatcgtagtagtttcttgtattgtcgatttcttacaatatgtgtttgggtatg |
103 |
Q |
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| T |
28902053 |
agagaaatttgacccaaatctaatataagtgtgagcgtaagtattgaaatcgtagtagtttcttgtattgtcggtttcttacaatatgtgtttgggtatg |
28902152 |
T |
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| Q |
104 |
ctcattttatgagctactagcattttagaatgagacccaagctatttttacattctatgttttacaatatcttannnnnnnnncggttaatgtcataatt |
203 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |
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| T |
28902153 |
ctcattttatgagctactagctttttagaatgagacccaagctatttttacattctatgttttacaatatcttgttttttttcccgttaatttcataatt |
28902252 |
T |
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| Q |
204 |
ttctttacaaatctatgctttacaac |
229 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28902253 |
ttctttacaaatctatgctttacaac |
28902278 |
T |
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