View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11133_high_6 (Length: 626)
Name: NF11133_high_6
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_high_6 |
 | |
|
| [»] scaffold0394 (2 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 161 - 614
Target Start/End: Complemental strand, 15618001 - 15617546
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15618001 |
atactcaccatgtagtgcagtcaaaaaatatgattcttcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttccaacca |
15617902 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaaatacatgc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15617901 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaactcaccacccattgtgaagtaaagcaagtaaatcacaatatataaaatacatgc |
15617802 |
T |
|
| Q |
361 |
gcattgtaaaaaagaatgagatattagttattccacaaaagactaatatcacataggtatgtacttgtatatcaaagaggcatttaaaagtttta--ttc |
458 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |
|
|
| T |
15617801 |
gcattataaaacagaatgagatattgattattccacaaaagactaatatcacataggtatgtacctgtatatcacagaggcatttaaaagttttatcttc |
15617702 |
T |
|
| Q |
459 |
tcttttgtagttataaatgactagtagtagacaacaacataaggacattgtgctgcttgaattaccttcaattgttaagaatgcataatggacgtacaag |
558 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
15617701 |
tcttttgcagttataaatgactagtagcagacaacaacataaggacattgtgctacttgaattaccttcaattatgaagaatgcataatggacgtacaag |
15617602 |
T |
|
| Q |
559 |
atagcattaaggttgttatatatcagataaaaggaaggtaattagttcacaggttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15617601 |
atagcattaaggttgttatatatcagataaaaggaaggtaattagttcacaggttc |
15617546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 16564691 - 16564533
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| |||| ||||||| |||||||||| |||||| |||||||||||||||||||| |||||||| ||| || |
|
|
| T |
16564691 |
atactcaccaagtagtgcagcgaaaatataggattcttcaaatgtatcatcatc---ttcttcctcttgtgtattgtgttccaattgttccttccaaaca |
16564595 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaaca-taccatccattgt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
16564594 |
ttcattttaataaagatggacctgtgtgtaaatgacaatatataaacactaccatccattgt |
16564533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 52214955 - 52214892
Alignment:
| Q |
545 |
aatggacgtacaagatagcattaaggttgttatatatcagataaaaggaaggtaattagttcaca |
609 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
52214955 |
aatggacgtacaagatagcatta-ggttgttatgtatcagataaaaggaaagtaattagttcaca |
52214892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 563 - 614
Target Start/End: Complemental strand, 16564135 - 16564084
Alignment:
| Q |
563 |
cattaaggttgttatatatcagataaaaggaaggtaattagttcacaggttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16564135 |
cattaaggttgttatatatcagataaaatgaaggtaattagttcacaggttc |
16564084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 52215105 - 52215061
Alignment:
| Q |
474 |
aatgactagtagtagacaacaacataaggacattgtgctgcttga |
518 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
52215105 |
aatgactggtagcagacaacaacataaggacactgtgctgcttga |
52215061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 36310745 - 36310555
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
36310745 |
atactcaccaagtagtgcagccaaaatataggattcttcaaatgtatcatcatcttcttcttcttcttgtgtattgtgttccaattgttccttccaaaca |
36310646 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaa |
352 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36310645 |
ttcattttaataaag-tggacctgtgtgtaaatgacaatatataaacacgccatccattgtgaagtaaagcaaataaatcacaatatataaa |
36310555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 161 - 352
Target Start/End: Original strand, 5917880 - 5918067
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
5917880 |
atactcaccaagtagtgcagccaaaatataggattcttcaaatgtatcatcatc---ttcttcttcttgtgtattgtgttccaattgttccttccaaaag |
5917976 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaa |
352 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5917977 |
ttcattttaataaag-tggacatgtgtgtaaatgacaatatataaacacaccatccattgtgaagtaaagcaaataaatcacaatatataaa |
5918067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 161 - 352
Target Start/End: Original strand, 35570842 - 35571032
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
35570842 |
atactcaccaagtagtgcagccaaaatataggattcttcaaatgtatcatcatcttcttcttcttcttgtgtattgtgttccaattgttccttccaaaca |
35570941 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaa |
352 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35570942 |
ttcattttaataaag-tggacctgtgtgtaaatgacaatatataaacacgccatccattgtgaagtaaagcaaataaatcacaatatataaa |
35571032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 22480663 - 22480473
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| |||||| |||||||| ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
22480663 |
atactcaccaagtagtgtagccaaaatataggattcttcaaatgtatcatcatcttcttcttcttcttgtgtattgtgttccaattgttccttccaaaca |
22480564 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaa |
352 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22480563 |
ttcattttaataaag-tggacctgtgtgtaaatgacaatatataaacacgccatccattgtgaagtaaagcaaataaatcacaatatataaa |
22480473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 37637856 - 37637668
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
37637856 |
atactcaccaagtagtgcagtcaaaatataggattcttcaaatgtatcatcatc---ttcttcttcttgtgtattgtgttccaattgttccttccataca |
37637760 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaa |
352 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37637759 |
ttcattttaataaagatggacttgtgtgtaaatgacaatatataaacacaccatccattgtgaagtaaagcaaataaatcacaatatataaa |
37637668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 563 - 614
Target Start/End: Complemental strand, 37637250 - 37637199
Alignment:
| Q |
563 |
cattaaggttgttatatatcagataaaaggaaggtaattagttcacaggttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37637250 |
cattaaggttgttatatatcagataaaatgaaggtaattagttcacaggttc |
37637199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 10373165 - 10373232
Alignment:
| Q |
234 |
ttgtgttccaaatgttccttgcaaccattcattttaataaagatggacctgtgtgtaaatcacaatat |
301 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| | | ||||||| ||||||||||||| |
|
|
| T |
10373165 |
ttgtgttccaaatgttcattccaaccattcattttaataaacaggaacctgtgcataaatcacaatat |
10373232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 7e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 16546604 - 16546417
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
16546604 |
atactcaccaagtagtgcagccaaaatataggattcttcaaatgtatcatcatc---ttcttcttcttgtgtattgtgttccaattgttccttccaaaca |
16546508 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatatataaacataccatccattgtgaagtaaagcaagtaaatcacaatatataaa |
352 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
16546507 |
ttcattttaataaag-tgaacctgtgtgtaaatgacaatatataaacacaccatccattatgaagtaaagcaaataaatcacaatatataaa |
16546417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 17831696 - 17831833
Alignment:
| Q |
161 |
atactcaccatgtagtgcagccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacca |
260 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
17831696 |
atactcaccaagtaatgcagccaaaaaataggattcttgaaatatatca---tcatcttcttcttcttgtgtattgtgttccaaatgttcattccaacca |
17831792 |
T |
|
| Q |
261 |
ttcattttaataaagatggacctgtgtgtaaatcacaatat |
301 |
Q |
| |
|
||||||| |||||| | | |||| || |||||||||||||| |
|
|
| T |
17831793 |
ttcatttgaataaacaggaacctatgcgtaaatcacaatat |
17831833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 614
Target Start/End: Complemental strand, 16546144 - 16546093
Alignment:
| Q |
563 |
cattaaggttgttatatatcagataaaaggaaggtaattagttcacaggttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
16546144 |
cattaaggttgttatatatcagataaaatgaaggtaattagttcataggttc |
16546093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 17831887 - 17831923
Alignment:
| Q |
301 |
tataaacataccatccattgtgaagtaaagcaagtaa |
337 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
17831887 |
tataaacataccatccaatttgaagtaaagcaagtaa |
17831923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 9669 - 9807
Alignment:
| Q |
161 |
atactcaccatgtagtgcag-ccaaaaaatatgattattcaaatatatcatcatcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaacc |
259 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||| |||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
9669 |
atactcaccaagtaatgcagaccaaaaaataggattcttgaaatatatcataatc---ttcttcttcttgtgtattgtgttccaaatgttcattccaacc |
9765 |
T |
|
| Q |
260 |
attcattttaataaagatggacctgtgtgtaaatcacaatat |
301 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
9766 |
attcattttaataaacatgaacctgtgcgtaaatcaaaatat |
9807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 9861 - 9897
Alignment:
| Q |
301 |
tataaacataccatccattgtgaagtaaagcaagtaa |
337 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
9861 |
tataaacataccatccaatttgaagtaaagcaagtaa |
9897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 6682 - 6605
Alignment:
| Q |
17 |
aatatttgtatatatttaatagcatactcaatagaagttagcacaccaaacaaacactaatagaaagaaatttttgtc |
94 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6682 |
aatatttttatatatttaatagtatgctcaattgaagttagcacaccaaacaaacactaatagaaagaaatttttgtc |
6605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 16247742 - 16247861
Alignment:
| Q |
183 |
aaaaaatatgattattcaaatatatcat---catcatcttcttcttcttgtgtattgtgttccaaatgttccttgcaaccattcattttaataaagatgg |
279 |
Q |
| |
|
|||||| | |||| |||||||||||||| |||| |||||||||||||||||||||||||| |||| ||| || |||||||||||||||||| ||| | |
|
|
| T |
16247742 |
aaaaaaaaggattcttcaaatatatcattctcatcttcttcttcttcttgtgtattgtgttctaaatattcttttcaaccattcattttaatagagagga |
16247841 |
T |
|
| Q |
280 |
acctgtgtgtaaatcacaat |
299 |
Q |
| |
|
|| |||||||||||| |||| |
|
|
| T |
16247842 |
acttgtgtgtaaatcgcaat |
16247861 |
T |
|
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