View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_high_67 (Length: 219)

Name: NF11133_high_67
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_high_67
NF11133_high_67
[»] chr6 (13 HSPs)
chr6 (125-186)||(9838109-9838170)
chr6 (125-186)||(24949300-24949361)
chr6 (132-186)||(11129031-11129085)
chr6 (125-174)||(11676614-11676663)
chr6 (132-186)||(3621790-3621844)
chr6 (125-183)||(8176626-8176684)
chr6 (132-186)||(32359427-32359481)
chr6 (137-186)||(7056127-7056176)
chr6 (125-186)||(22050241-22050302)
chr6 (145-186)||(26485672-26485713)
chr6 (141-186)||(34379068-34379113)
chr6 (141-186)||(34607307-34607352)
chr6 (61-97)||(1507828-1507864)
[»] chr7 (19 HSPs)
chr7 (137-186)||(47459843-47459892)
chr7 (125-182)||(28608787-28608844)
chr7 (125-186)||(33258074-33258135)
chr7 (132-186)||(22950807-22950861)
chr7 (125-179)||(42841862-42841916)
chr7 (125-186)||(10227449-10227510)
chr7 (137-186)||(31815058-31815107)
chr7 (125-185)||(36298164-36298224)
chr7 (140-179)||(34368656-34368695)
chr7 (132-183)||(42881149-42881199)
chr7 (126-180)||(9142259-9142313)
chr7 (132-186)||(17896480-17896534)
chr7 (132-186)||(31430759-31430813)
chr7 (132-178)||(36340586-36340632)
chr7 (125-178)||(3838055-3838108)
chr7 (141-186)||(30866725-30866770)
chr7 (125-186)||(41675176-41675237)
chr7 (126-183)||(46715304-46715361)
chr7 (141-186)||(47408322-47408367)
[»] chr4 (26 HSPs)
chr4 (125-186)||(33809283-33809344)
chr4 (125-186)||(54231735-54231796)
chr4 (125-186)||(36659414-36659475)
chr4 (127-186)||(52061756-52061815)
chr4 (141-179)||(31861980-31862018)
chr4 (125-179)||(34464473-34464527)
chr4 (125-179)||(42629513-42629567)
chr4 (125-186)||(22828388-22828449)
chr4 (145-186)||(23719771-23719812)
chr4 (133-186)||(38027562-38027615)
chr4 (141-186)||(45725748-45725793)
chr4 (137-186)||(55935315-55935364)
chr4 (137-184)||(34603832-34603879)
chr4 (132-186)||(6195227-6195281)
chr4 (132-186)||(8735592-8735646)
chr4 (132-186)||(13629180-13629234)
chr4 (125-175)||(18135048-18135098)
chr4 (141-179)||(47596607-47596645)
chr4 (125-175)||(49122258-49122308)
chr4 (125-186)||(3036579-3036640)
chr4 (141-186)||(30939367-30939412)
chr4 (137-186)||(32239608-32239657)
chr4 (141-186)||(38617296-38617341)
chr4 (125-186)||(49089102-49089163)
chr4 (125-178)||(52677161-52677214)
chr4 (136-180)||(53467544-53467589)
[»] chr3 (17 HSPs)
chr3 (125-186)||(33874538-33874599)
chr3 (132-179)||(45513317-45513364)
chr3 (125-179)||(48152178-48152232)
chr3 (125-178)||(45145321-45145374)
chr3 (132-179)||(35315332-35315379)
chr3 (132-174)||(17102954-17102996)
chr3 (141-186)||(40010656-40010701)
chr3 (132-186)||(13158431-13158485)
chr3 (121-179)||(36234553-36234611)
chr3 (125-179)||(47104154-47104208)
chr3 (125-182)||(32980833-32980890)
chr3 (137-186)||(41351186-41351235)
chr3 (125-186)||(41926874-41926934)
chr3 (125-182)||(48214248-48214305)
chr3 (138-186)||(27483780-27483828)
chr3 (142-186)||(27992450-27992494)
chr3 (123-179)||(42515173-42515229)
[»] chr1 (29 HSPs)
chr1 (125-186)||(35700358-35700419)
chr1 (125-179)||(10507004-10507058)
chr1 (137-179)||(36850842-36850884)
chr1 (125-186)||(32168295-32168356)
chr1 (125-186)||(37437036-37437097)
chr1 (125-186)||(48174656-48174717)
chr1 (132-186)||(1024756-1024810)
chr1 (141-186)||(4100892-4100937)
chr1 (125-186)||(19929449-19929510)
chr1 (125-178)||(42800299-42800352)
chr1 (125-186)||(51613604-51613665)
chr1 (125-177)||(1038280-1038332)
chr1 (125-177)||(1045186-1045238)
chr1 (126-186)||(51972264-51972324)
chr1 (125-179)||(5598238-5598292)
chr1 (141-187)||(9127878-9127924)
chr1 (132-186)||(30686611-30686665)
chr1 (132-186)||(35483764-35483818)
chr1 (132-186)||(42787136-42787190)
chr1 (141-182)||(1428614-1428655)
chr1 (125-186)||(1677391-1677452)
chr1 (125-186)||(29830946-29831007)
chr1 (125-178)||(30702281-30702334)
chr1 (125-186)||(31487762-31487823)
chr1 (137-182)||(41155479-41155524)
chr1 (125-182)||(46096739-46096796)
chr1 (133-186)||(51974154-51974207)
chr1 (125-185)||(35255679-35255739)
chr1 (125-185)||(52649713-52649773)
[»] chr2 (16 HSPs)
chr2 (122-186)||(8443868-8443932)
chr2 (125-186)||(13849704-13849765)
chr2 (122-186)||(43077482-43077546)
chr2 (125-186)||(3376266-3376327)
chr2 (141-186)||(13215602-13215647)
chr2 (125-186)||(13965800-13965861)
chr2 (125-179)||(9706980-9707034)
chr2 (128-186)||(10263952-10264010)
chr2 (132-186)||(15893569-15893623)
chr2 (125-179)||(37116599-37116653)
chr2 (141-186)||(1259618-1259663)
chr2 (125-182)||(7529697-7529754)
chr2 (125-182)||(13000904-13000961)
chr2 (125-186)||(31011707-31011768)
chr2 (141-186)||(34262811-34262856)
chr2 (125-186)||(44360626-44360687)
[»] chr5 (29 HSPs)
chr5 (132-179)||(6689781-6689828)
chr5 (133-184)||(26906673-26906724)
chr5 (125-179)||(13703272-13703326)
chr5 (132-177)||(7466364-7466409)
chr5 (125-186)||(18437306-18437367)
chr5 (137-175)||(3892998-3893036)
chr5 (132-186)||(4427388-4427442)
chr5 (125-186)||(6008059-6008121)
chr5 (125-179)||(7408506-7408560)
chr5 (132-186)||(7579650-7579704)
chr5 (132-186)||(18000514-18000568)
chr5 (125-182)||(7834052-7834109)
chr5 (125-186)||(12722942-12723003)
chr5 (125-186)||(12784426-12784487)
chr5 (140-184)||(5143983-5144027)
chr5 (132-179)||(40198970-40199017)
chr5 (125-179)||(5119353-5119407)
chr5 (125-179)||(7734774-7734828)
chr5 (132-186)||(31803506-31803560)
chr5 (132-186)||(34261494-34261548)
chr5 (132-186)||(37809941-37809995)
chr5 (132-186)||(39073226-39073280)
chr5 (125-179)||(42911725-42911779)
chr5 (137-178)||(4017601-4017642)
chr5 (125-186)||(28024242-28024303)
chr5 (132-177)||(37633858-37633903)
chr5 (122-179)||(39893799-39893856)
chr5 (126-183)||(40927328-40927385)
chr5 (137-185)||(1795101-1795149)
[»] scaffold0343 (1 HSPs)
scaffold0343 (125-179)||(7617-7671)
[»] scaffold0009 (1 HSPs)
scaffold0009 (132-186)||(147114-147168)
[»] chr8 (23 HSPs)
chr8 (125-179)||(8672687-8672741)
chr8 (125-186)||(27911658-27911719)
chr8 (125-186)||(27958077-27958138)
chr8 (132-186)||(23793257-23793311)
chr8 (132-186)||(34982029-34982083)
chr8 (122-179)||(26740130-26740187)
chr8 (125-180)||(1739886-1739941)
chr8 (125-179)||(1245505-1245559)
chr8 (125-179)||(29091078-29091132)
chr8 (132-186)||(38482778-38482832)
chr8 (126-184)||(42352931-42352989)
chr8 (141-186)||(7483951-7483996)
chr8 (125-178)||(7605894-7605946)
chr8 (145-186)||(12342600-12342641)
chr8 (125-186)||(14061135-14061196)
chr8 (137-186)||(18842734-18842783)
chr8 (125-186)||(23848542-23848603)
chr8 (125-186)||(23855750-23855811)
chr8 (137-186)||(35029751-35029800)
chr8 (141-186)||(35296253-35296298)
chr8 (137-186)||(41701468-41701517)
chr8 (141-182)||(43641979-43642020)
chr8 (123-179)||(3720871-3720927)
[»] scaffold0002 (1 HSPs)
scaffold0002 (132-186)||(148503-148557)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 9838170 - 9838109
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9838170 ttattgattgttttgatttgtgtaaaatatcacaaaatgacaattaaaaaggaacagaggta 9838109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 24949300 - 24949361
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  24949300 ttattgattgttttggtttgtgtaaaatatcaaaaaataacaattaaaaaggaacggaggta 24949361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 11129031 - 11129085
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| |||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  11129031 ttgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 11129085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 11676663 - 11676614
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaa 174  Q
    |||||| |||| ||| |||||||||||||||||||| |||||||||||||    
T  11676663 ttattgattgtcttggtttgtgtaaaatatcaaaaagtaacaattaaaaa 11676614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 3621790 - 3621844
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||| ||||||  | |||||||||||||||||||||||    
T  3621790 ttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 3621844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 8176626 - 8176684
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 183  Q
    |||||| |||| |||||||||||||||| | ||||| | ||||||||||| ||||||||    
T  8176626 ttattgattgtcttgatttgtgtaaaatgttaaaaagtgacaattaaaaaagaacagag 8176684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 32359481 - 32359427
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| ||||| |||||||||||||  |||||||||||||||||| ||||||    
T  32359481 ttgtcttggtttgtataaaatatcaaaatgtaacaattaaaaaggaacggaggta 32359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 7056176 - 7056127
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||| ||||||| | ||||||||||||| || ||||||    
T  7056176 ttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggtacggaggta 7056127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 22050241 - 22050302
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  22050241 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 22050302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 26485713 - 26485672
Alignment:
Q  145 tgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  26485713 tgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 26485672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 34379068 - 34379113
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  34379068 tttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 34379113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 34607307 - 34607352
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  34607307 tttgtataaaatgtcaaaaattaacaattaaaaaggaacggaggta 34607352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 1507864 - 1507828
Alignment:
Q  61 ctcatttttactttcactatcttagttgaaaatttta 97  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  1507864 ctcatttttactctcactatcttaattgaaaatttta 1507828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 47459843 - 47459892
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47459843 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacggaggta 47459892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 28608787 - 28608844
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  28608787 ttattgattgtcttgatttgtgtaaaatatcaaaatatgacaattaaaaaggaacaga 28608844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 33258074 - 33258135
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33258074 ttattgattgtattgatttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 33258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 22950861 - 22950807
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  22950861 ttgtcttggtttgtgtaaaatgtcaaaatataacaattaaaaaggaacagaggta 22950807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 42841916 - 42841862
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||    
T  42841916 ttattgattgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 42841862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 10227449 - 10227510
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| | ||||| | |||||||||||||||| ||||||    
T  10227449 ttattgattgtcttgatttgtgtaaaatgttaaaaagtgacaattaaaaaggaacggaggta 10227510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 31815107 - 31815058
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||| | ||||||| |||||||||||||||| ||||||    
T  31815107 ttgatttgtgtaaaatgttaaaaaatgacaattaaaaaggaacggaggta 31815058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 36298224 - 36298164
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 185  Q
    |||||| ||||||||||||||||||||| ||||||  | ||||||||||| ||| ||||||    
T  36298224 ttattgattgttttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaagaagagaggt 36298164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 34368695 - 34368656
Alignment:
Q  140 atttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  34368695 atttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 34368656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 42881149 - 42881199
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 183  Q
    |||| ||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  42881149 ttgtcttggtttgtataaaatatcaaaa-ataacaattaaaaaggaacagag 42881199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 9142313 - 9142259
Alignment:
Q  126 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaaca 180  Q
    |||| ||||| |||||||||||||||  |||||| | ||||||||||||||||||    
T  9142313 tatttgttgtcttgatttgtgtaaaaagtcaaaataaaacaattaaaaaggaaca 9142259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 17896534 - 17896480
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| |||||||||||||||| ||||||  | |||||||||||||||| ||||||    
T  17896534 ttgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 17896480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 31430759 - 31430813
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||| ||||||  | |||||||||||||||||||||||    
T  31430759 ttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 31430813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 36340586 - 36340632
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||| ||| |||||||||||| | |||||||||||||||||||||||    
T  36340586 ttgtcttggtttgtgtaaaatgtaaaaaaataacaattaaaaaggaa 36340632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 3838055 - 3838108
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||| |||| |||||||| ||||||| ||||||| | |||||||||||||||    
T  3838055 ttattgattgtcttgatttgcgtaaaatgtcaaaaagtgacaattaaaaaggaa 3838108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 30866770 - 30866725
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  30866770 tttgtgtaaaatgtcaaaaaatgacagttaaaaaggaacggaggta 30866725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 41675237 - 41675176
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| ||| |||||||| ||||||  | |||||||||||||||||||||||    
T  41675237 ttattgattgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 41675176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 46715361 - 46715304
Alignment:
Q  126 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 183  Q
    |||| ||||| |||||||||||||||  ||||||  | ||||||||||||||||||||    
T  46715361 tatttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaaggaacagag 46715304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 47408322 - 47408367
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||||    
T  47408322 tttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 47408367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 33809283 - 33809344
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||    
T  33809283 ttattgattgttttgatttgtgtaaaatgttaaaaagtgacaattaaaaaggaacagaggta 33809344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 54231735 - 54231796
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  54231735 ttattgattgtcttgatttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 54231796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 36659475 - 36659414
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||||| |||||||| ||||||| ||||||    
T  36659475 ttattgattgtcttgatttgtgtaaaatgtcaaaaaatgacaattaagaaggaacggaggta 36659414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 52061756 - 52061815
Alignment:
Q  127 attggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| |||| |||||||||||||||| |||||| || |||||||||||||||| ||||||    
T  52061756 attgattgtcttgatttgtgtaaaatgtcaaaatatgacaattaaaaaggaacggaggta 52061815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 31862018 - 31861980
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  31862018 tttgtgtaaaatttcaaaaaataacaattaaaaaggaac 31861980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 34464473 - 34464527
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| ||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  34464473 ttattgattgttttaatttgtataaaatatcaaaatgtaacaattaaaaaggaac 34464527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 42629513 - 42629567
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||| |||||||||||||||||||||| ||||||||||| ||||    
T  42629513 ttattgattgtcttggtttgtgtaaaatatcaaaaaatgacaattaaaaacgaac 42629567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 22828449 - 22828388
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  22828449 ttattggttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 22828388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 23719812 - 23719771
Alignment:
Q  145 tgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  23719812 tgtaaaatgtcaaaaaataacaattaaaaaggaacggaggta 23719771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 38027615 - 38027562
Alignment:
Q  133 tgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||| ||| |||||||||||||||| | |||||||||||||||| ||||||    
T  38027615 tgttttggtttatgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 38027562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 45725748 - 45725793
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  45725748 tttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 45725793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 55935315 - 55935364
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  55935315 ttgatttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 55935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 34603832 - 34603879
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 184  Q
    ||||||||||||||| |||||||  | |||||||||||||||||||||    
T  34603832 ttgatttgtgtaaaaaatcaaaatgtgacaattaaaaaggaacagagg 34603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 6195227 - 6195281
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||| ||||| ||||||| | |||||||||||||||||||||||    
T  6195227 ttgtcttggtttgtgaaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 6195281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 8735592 - 8735646
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  8735592 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 8735646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 13629234 - 13629180
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||| ||||||  | |||||||||||||||||||||||    
T  13629234 ttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 13629180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 18135098 - 18135048
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaag 175  Q
    |||||| |||||||| |||||||||||| |||||| || ||||||||||||    
T  18135098 ttattgattgttttggtttgtgtaaaatgtcaaaatatgacaattaaaaag 18135048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 47596645 - 47596607
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  47596645 tttgtgtaaaatgtcaaaaaatgacaattaaaaaggaac 47596607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 49122308 - 49122258
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaag 175  Q
    |||||| |||||||| |||||||||||| |||||| || ||||||||||||    
T  49122308 ttattgattgttttggtttgtgtaaaatgtcaaaatatgacaattaaaaag 49122258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 3036579 - 3036640
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| ||||| |||||| |||||||| | |||| || |||||||||||||||| ||||||    
T  3036579 ttattgattgttatgatttatgtaaaatgtaaaaatatgacaattaaaaaggaacggaggta 3036640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 30939367 - 30939412
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||    
T  30939367 tttgtgtaaaaaatcaaaatatgacaattaaaaaggaacggaggta 30939412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 32239608 - 32239657
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||| ||||||||||||  |||||||||||||| ||||| |||||    
T  32239608 ttgatttgtataaaatatcaaagtataacaattaaaaatgaacaaaggta 32239657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 38617341 - 38617296
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||  | |||||||||||||||| ||||||    
T  38617341 tttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 38617296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 49089102 - 49089163
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| || | ||||||||||||||| | |||||||||||||||| ||||||    
T  49089102 ttattgattgtcttggttcgagtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 49089163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 52677214 - 52677161
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||| |||||||| |||||||||||| ||||||  | |||||||||||||||    
T  52677214 ttattgattgttttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaa 52677161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 53467589 - 53467544
Alignment:
Q  136 tttgatttgtgtaaaatatc-aaaaaataacaattaaaaaggaaca 180  Q
    ||||||||||||||||| || ||||||| |||||||||||||||||    
T  53467589 tttgatttgtgtaaaatgtcaaaaaaatgacaattaaaaaggaaca 53467544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 33874599 - 33874538
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33874599 ttattgattgttttggtttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 33874538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 45513364 - 45513317
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  45513364 ttgttttgatttgtgtaaaatatcaaaatatgacaattaaaaaggaac 45513317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 48152178 - 48152232
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  48152178 ttattgattgtattgatttgtgtaaaatataaaaaaatgacaattaaaaaggaac 48152232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 45145321 - 45145374
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||| |||| ||| |||||||||||||||||||||| |||||||||||||||    
T  45145321 ttattgattgtcttggtttgtgtaaaatatcaaaaaatgacaattaaaaaggaa 45145374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 35315332 - 35315379
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  35315332 ttgtcttgatttgtgtaaaatgtcaaaaaatgacaattaaaaaggaac 35315379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 17102954 - 17102996
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaa 174  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  17102954 ttgttttaatttgtgtaaaatgtcaaaaaataacaattaaaaa 17102996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 40010701 - 40010656
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||    
T  40010701 tttgtgtaaaatatcaaaaagtaacacttaaaaaggaacggaggta 40010656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 13158485 - 13158431
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| ||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  13158485 ttgtcttggtttatgtaaaatgtcaaaatataacaattaaaaaggaacggaggta 13158431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 36234553 - 36234611
Alignment:
Q  121 tcacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| ||| |||| || ||||||||||||||||||||  | ||||||||||||||||    
T  36234553 tcactttttgattgtcttaatttgtgtaaaatatcaaaatgtgacaattaaaaaggaac 36234611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 47104208 - 47104154
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||||||||||| |||||||| ||||||| |  |||||||||||||||    
T  47104208 ttattgattgttttgatttatgtaaaatgtcaaaaagtggcaattaaaaaggaac 47104154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 32980833 - 32980890
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||||||    
T  32980833 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacaga 32980890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 41351235 - 41351186
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||| |||||||||||| ||| | |||||||||||||||| ||||||    
T  41351235 ttgatttatgtaaaatatcagaaagtgacaattaaaaaggaacggaggta 41351186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 41926874 - 41926934
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| | ||||| | |||||||||||||||||||||||    
T  41926874 ttattgattgtcttggtttgtgtaaaatgt-aaaaagtgacaattaaaaaggaacagaggta 41926934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 48214248 - 48214305
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||| |||| ||| | |||||||||| ||||||| | |||||||||||||||||||    
T  48214248 ttattgattgtattggtgtgtgtaaaatgtcaaaaagtgacaattaaaaaggaacaga 48214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 27483828 - 27483780
Alignment:
Q  138 tgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||| | |||| || |||||||||||||||||||||||    
T  27483828 tgatttgtataaaatgttaaaatatgacaattaaaaaggaacagaggta 27483780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 27992450 - 27992494
Alignment:
Q  142 ttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||    
T  27992450 ttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 27992494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 42515229 - 42515173
Alignment:
Q  123 acttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||||| |||| ||| |||||||||||| | ||||| | ||||||||||||||||    
T  42515229 acttattgattgtcttggtttgtgtaaaatgttaaaaagttacaattaaaaaggaac 42515173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 35700419 - 35700358
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  35700419 ttattgattgtcttgatttgtgtaaaatatcacaaaatgacaattaaaaaggaacggaggta 35700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 10507004 - 10507058
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  10507004 ttattgattgtcttgatttgtgtaaaatatcacaaaatgacaattaaaaaggaac 10507058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 36850842 - 36850884
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  36850842 ttgatttgtgtaaaatatcaaaaaatgacaattaaaaaggaac 36850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 32168356 - 32168295
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||||||||||| | |||||||||||||||| ||||||    
T  32168356 ttattgattgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 32168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 37437097 - 37437036
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  37437097 ttattgattgtcttggtttgtgtaaaatgtcaaaatatgacaattaaaaaggaacagaggta 37437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 48174717 - 48174656
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||||||||||| | | |||||||||||||| ||||||    
T  48174717 ttattgattgtcttgatttgtgtaaaatatcaaaaagtgataattaaaaaggaacggaggta 48174656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 1024756 - 1024810
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  1024756 ttgttttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 1024810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 4100937 - 4100892
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  4100937 tttgtgtaaaatatcaaaaagtaataattaaaaaggaacggaggta 4100892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 19929510 - 19929449
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| | ||||||| |||||||||||||||| ||||||    
T  19929510 ttattgattgtcttggtttgtgtaaaatgttaaaaaatgacaattaaaaaggaacggaggta 19929449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 42800299 - 42800352
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||| |||||||| |||||||||||| ||||||| | |||||||||||||||    
T  42800299 ttattgattgttttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaa 42800352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 51613604 - 51613665
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||||| ||||| | |||||||||||||||| ||||||    
T  51613604 ttattgattgtcttggtttgtgtaaaatataaaaaagtgacaattaaaaaggaacggaggta 51613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 1038280 - 1038332
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 177  Q
    |||||| |||| || ||| |||||||||||| |||||||||||||||||||||    
T  1038280 ttattgattgtctttattcgtgtaaaatatctaaaaataacaattaaaaagga 1038332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 1045186 - 1045238
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 177  Q
    |||||| |||| || ||| |||||||||||| |||||||||||||||||||||    
T  1045186 ttattgattgtctttattcgtgtaaaatatctaaaaataacaattaaaaagga 1045238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 51972324 - 51972264
Alignment:
Q  126 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||| |||| || ||||||||||||| ||||||| |||||||||||||  ||||||||||    
T  51972324 tattgattgtcttaatttgtgtaaaatgtcaaaaagtaacaattaaaaaataacagaggta 51972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 5598238 - 5598292
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||| |||||||||||| |||||| || ||||||||||||||||    
T  5598238 ttattgattgtcttggtttgtgtaaaatgtcaaaatatgacaattaaaaaggaac 5598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 9127878 - 9127924
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggtac 187  Q
    |||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  9127878 tttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacagatgtac 9127924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 30686611 - 30686665
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  30686611 ttgtcttggtttgtgtaaaatatcaaaacgtgacaattaaaaaggaacggaggta 30686665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 35483818 - 35483764
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||||||||| |||||| || ||||||||||| |||| ||||||    
T  35483818 ttgttttggtttgtgtaaaatgtcaaaatatgacaattaaaaaagaacggaggta 35483764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 42787190 - 42787136
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| |||||||  ||||||| ||||||||| |||||||||||||||| ||||||    
T  42787190 ttgtcttgatttaggtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 42787136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 1428614 - 1428655
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||||||||| ||||||||| ||| |||||||||||||||    
T  1428614 tttgtgtaaaatgtcaaaaaatgacagttaaaaaggaacaga 1428655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 1677391 - 1677452
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||  | |||||||||||||| | ||||||    
T  1677391 ttattgattgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggagcggaggta 1677452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 29830946 - 29831007
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  29830946 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 29831007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 30702334 - 30702281
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||    
T  30702334 ttattgattgtattggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaa 30702281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 31487823 - 31487762
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  31487823 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 31487762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 41155479 - 41155524
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||    
T  41155479 ttgatttgtgtaaaatgtcaaaataagacaattaaaaaggaacaga 41155524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 46096739 - 46096796
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||| |||| ||||| ||| |||||||||||||| | |||||||| ||||||||||    
T  46096739 ttattgattgtattgatgtgtataaaatatcaaaaagtgacaattaagaaggaacaga 46096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 51974207 - 51974154
Alignment:
Q  133 tgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||| || ||||||||| ||||||| | |||||||||||||||| ||||||    
T  51974207 tgttttggttcgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 51974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 35255679 - 35255739
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 185  Q
    |||||| |||| ||| ||| |||||||| ||||||| | |||||||||||| |||||||||    
T  35255679 ttattgattgtcttggtttatgtaaaatgtcaaaaagtgacaattaaaaagtaacagaggt 35255739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 52649773 - 52649713
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 185  Q
    |||||| |||| |||||| ||| ||||| ||||||| | |||||||||||||||| |||||    
T  52649773 ttattgattgtcttgattagtgaaaaatgtcaaaaagtgacaattaaaaaggaacggaggt 52649713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 8443868 - 8443932
Alignment:
Q  122 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  8443868 cacttattgattgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 8443932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 13849765 - 13849704
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||||||| ||| | |||||||||||||||| |||||||||||||||| ||||||    
T  13849765 ttattgattgttttggtttatataaaatatcaaaaaatgacaattaaaaaggaacggaggta 13849704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 43077482 - 43077546
Alignment:
Q  122 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||| |||| ||| |||||||||||| | ||||||| |||||||||||||||| ||||||    
T  43077482 cacttattgattgtcttggtttgtgtaaaatgttaaaaaatgacaattaaaaaggaacggaggta 43077546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 3376327 - 3376266
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||  | |||||||||||||||| ||||||    
T  3376327 ttattgattgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 3376266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 13215602 - 13215647
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||    
T  13215602 tttgtgtaaaatgtcaaaaagtaacaattaaaaaggaacggaggta 13215647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 13965800 - 13965861
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||| ||||||    
T  13965800 ttattgattgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 13965861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 9706980 - 9707034
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||| |||||||||||| ||||||| | ||||||||||||||||    
T  9706980 ttattgattgtattggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaac 9707034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 10263952 - 10264010
Alignment:
Q  128 ttggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| ||| |||||||||||| |||||| || |||||| ||||||||| ||||||    
T  10263952 ttggttgtcttggtttgtgtaaaatgtcaaaatatgacaatttaaaaggaacggaggta 10264010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 15893623 - 15893569
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  15893623 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 15893569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 37116653 - 37116599
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    ||||||||||| ||| |||||||||||| ||| | ||| ||||||||||||||||    
T  37116653 ttattggttgtcttggtttgtgtaaaatgtcagagaatgacaattaaaaaggaac 37116599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 1259663 - 1259618
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||  |||||||||||||| ||| ||||||    
T  1259663 tttgtgtaaaatatcaaaatgtaacaattaaaaagaaacggaggta 1259618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 7529754 - 7529697
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    ||||| ||||| || ||||||||||||   |||||||| |||||||||||||||||||    
T  7529754 ttattagttgtcttcatttgtgtaaaaagacaaaaaatgacaattaaaaaggaacaga 7529697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 13000961 - 13000904
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||| |||| || ||||||||||||| ||| ||| ||||||||||||| |||||||    
T  13000961 ttattgattgtcttaatttgtgtaaaatgtcacaaagtaacaattaaaaaagaacaga 13000904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 31011768 - 31011707
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| ||||| |||||| ||||||  |||||||||||||||||| ||||||    
T  31011768 ttattgattgtcttggtttgtataaaatgtcaaaatgtaacaattaaaaaggaacggaggta 31011707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 34262856 - 34262811
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||| ||||| | |||||||||||||||| ||||||    
T  34262856 tttgtgtaaaatataaaaaattgacaattaaaaaggaacggaggta 34262811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 44360626 - 44360687
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  44360626 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 44360687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 6689781 - 6689828
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6689781 ttgttttgatttgtgtaaaatgtaaaaaaataacaattaaaaaggaac 6689828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 26906673 - 26906724
Alignment:
Q  133 tgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 184  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  26906673 tgttttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaacagagg 26906724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 13703272 - 13703326
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||    
T  13703272 ttattgattgtcttgatttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 13703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 7466364 - 7466409
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 177  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  7466364 ttgtcttgatttatgtaaaatatcaaaaaataacaattaaaaagga 7466409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 18437367 - 18437306
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||||||||||| | |||||||||||||||| ||||||    
T  18437367 ttattgattgtattggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 18437306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 3892998 - 3893036
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaag 175  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3892998 ttgatttgtgtaaaatgtcaaaaaataacaattaaaaag 3893036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 4427442 - 4427388
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| |||||| ||||||||||||||||| | |||||||||||||||| ||||||    
T  4427442 ttgtcttgattcgtgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 4427388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 6008059 - 6008121
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaa-taacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| ||||||||||||||||||||| | |||||||||||||||| ||||||    
T  6008059 ttattgattgtattggtttgtgtaaaatatcaaaaaagtgacaattaaaaaggaacggaggta 6008121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 7408506 - 7408560
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||||||| |||||||||||| |||||| || ||||||||||||||||    
T  7408506 ttattgattgttttggtttgtgtaaaatgtcaaaagatgacaattaaaaaggaac 7408560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 7579704 - 7579650
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  7579704 ttgttttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 7579650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 18000514 - 18000568
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||||| ||||||    
T  18000514 ttgttttggtttgtgtaaaatgtcaaaaggtaacaattaaaaaggaacggaggta 18000568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 7834109 - 7834052
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||| || |||||||||||||||||||||||||  | |||||||||||| ||||||    
T  7834109 ttattgattattttgatttgtgtaaaatatcaaaaggtgacaattaaaaagaaacaga 7834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 12723003 - 12722942
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||| | | |||||||||||||||||||||    
T  12723003 ttattgattgtcttggtttgtgtaaaatgtcaaaaagtgagaattaaaaaggaacagaggta 12722942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 12784487 - 12784426
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| ||||||| | | |||||||||||||||||||||    
T  12784487 ttattgattgtcttggtttgtgtaaaatgtcaaaaagtgagaattaaaaaggaacagaggta 12784426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 5144027 - 5143983
Alignment:
Q  140 atttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 184  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||    
T  5144027 atttgtgtaaaatatcaaaaaataacggttaaaaaggaacggagg 5143983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 40198970 - 40199017
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||| ||||| |||||||||||||||||| ||||||||||||| ||||    
T  40198970 ttgtcttgatctgtgtaaaatatcaaaaagtaacaattaaaaaagaac 40199017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 5119353 - 5119407
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| || |||||| |||||||| ||||||| ||||||||||||||||    
T  5119353 ttattgattgtattaatttgtataaaatattaaaaaatgacaattaaaaaggaac 5119407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 7734828 - 7734774
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||||||| |||||||| | ||||||| ||||||||||||||||    
T  7734828 ttattgattgtcttgatttatgtaaaatttgaaaaaatgacaattaaaaaggaac 7734774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 31803506 - 31803560
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| |||||||||||||||| ||||||| | ||||||||||| |||| ||||||    
T  31803506 ttgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaagaacggaggta 31803560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 34261494 - 34261548
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| ||||| |||||| |||||| || |||||||||||||||||||||||    
T  34261494 ttgtcttggtttgtctaaaatgtcaaaatatgacaattaaaaaggaacagaggta 34261548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 37809941 - 37809995
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||||||||||| | |||||||||||||| | ||||||    
T  37809941 ttgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggatcggaggta 37809995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 39073226 - 39073280
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  39073226 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 39073280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 42911725 - 42911779
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||| |||||||||||||||||||  | ||||||||||||||||    
T  42911725 ttattgattgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaac 42911779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 4017601 - 4017642
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||||||||||||| ||||||| | |||||||||||||||    
T  4017601 ttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaa 4017642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 28024303 - 28024242
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| || ||||||||| |||||| || |||||||||||||||| ||||||    
T  28024303 ttattgattgtcttggttggtgtaaaatgtcaaaatatgacaattaaaaaggaacggaggta 28024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 37633858 - 37633903
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 177  Q
    |||| ||| |||||||||||||||||||| | ||||||||||||||    
T  37633858 ttgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaagga 37633903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 39893856 - 39893799
Alignment:
Q  122 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    ||||||||| || ||||| |||||||||||| | ||||| | ||||||||||||||||    
T  39893856 cacttattgattattttggtttgtgtaaaatgttaaaaagtgacaattaaaaaggaac 39893799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 40927328 - 40927385
Alignment:
Q  126 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 183  Q
    |||| ||||| || |||||||||||| |||||||  | ||||||||||||||||||||    
T  40927328 tatttgttgtcttaatttgtgtaaaaaatcaaaacgtgacaattaaaaaggaacagag 40927385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 1795149 - 1795101
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 185  Q
    |||||||||||||||| ||||||| ||||  |||||||||||| |||||    
T  1795149 ttgatttgtgtaaaatgtcaaaaagtaaccgttaaaaaggaacggaggt 1795101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 7617 - 7671
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||    
T  7617 ttattgattgtcttgatttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 7671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 147168 - 147114
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||    
T  147168 ttgttttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 147114  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 8672687 - 8672741
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| || ||||| |||||||||||||||||||||| ||||||||||||||||    
T  8672687 ttattgattattttggtttgtgtaaaatatcaaaaaatgacaattaaaaaggaac 8672741  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 27911719 - 27911658
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||||||||| ||||||||| || ||||||    
T  27911719 ttattgattgtcttgatttgtgtaaaatgtcaaaaaataacacttaaaaaggtacggaggta 27911658  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 27958138 - 27958077
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| |||||||||||||||| ||||||||||||| ||||||||| || ||||||    
T  27958138 ttattgattgtcttgatttgtgtaaaatgtcaaaaaataacacttaaaaaggtacggaggta 27958077  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 23793311 - 23793257
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||| | ||||||| |||||||||||||||||||||||    
T  23793311 ttgtcttggtttgtgtaaaatgttaaaaaatgacaattaaaaaggaacagaggta 23793257  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 34982029 - 34982083
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  34982029 ttgttttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 34982083  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 26740187 - 26740130
Alignment:
Q  122 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    ||||||||| |||| ||| |||||||||||| ||||||| | ||||||||||||||||    
T  26740187 cacttattgattgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaac 26740130  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 1739886 - 1739941
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaaca 180  Q
    |||||| |||| ||||||| |||||||| ||||||| | |||||||||||||||||    
T  1739886 ttattgattgtgttgatttatgtaaaatgtcaaaaagtgacaattaaaaaggaaca 1739941  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 1245505 - 1245559
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| ||||||| |||||||| ||||||| | ||||||||||||||||    
T  1245505 ttattgattgtcttgatttatgtaaaatgtcaaaaagtgacaattaaaaaggaac 1245559  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 29091132 - 29091078
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||| |||| |||||||||||||||| ||||||| | ||||||||||| ||||    
T  29091132 ttattgattgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaagaac 29091078  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 38482832 - 38482778
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  38482832 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 38482778  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 42352931 - 42352989
Alignment:
Q  126 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 184  Q
    |||| ||||||||| |||||||||||  |||||| || |||||||||||| ||||||||    
T  42352931 tatttgttgttttggtttgtgtaaaaagtcaaaacatgacaattaaaaagaaacagagg 42352989  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 7483951 - 7483996
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  7483951 tttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 7483996  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 7605946 - 7605894
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 178  Q
    |||||| |||| |||||||||||||||| | ||||| |||||||||||||||||    
T  7605946 ttattgattgtcttgatttgtgtaaaatgttaaaaa-taacaattaaaaaggaa 7605894  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 12342641 - 12342600
Alignment:
Q  145 tgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||| |||||| || |||||||||||||||||||||||    
T  12342641 tgtaaaatgtcaaaatatgacaattaaaaaggaacagaggta 12342600  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 14061196 - 14061135
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| |||||||||||| | ||||| | |||||||||||||||| ||||||    
T  14061196 ttattgattgtcttggtttgtgtaaaatgttaaaaagtgacaattaaaaaggaacggaggta 14061135  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 18842734 - 18842783
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||| ||||||  | |||||||||||||||| ||||||    
T  18842734 ttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 18842783  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 23848603 - 23848542
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| ||||||| |||| ||||||  | |||||||||||||||||||||||    
T  23848603 ttattgattgtcttggtttgtgtcaaatgtcaaaatgtgacaattaaaaaggaacagaggta 23848542  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 23855750 - 23855811
Alignment:
Q  125 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||| |||| ||| ||| |||||||| ||||||||| || ||||||||||||| ||||||    
T  23855750 ttattgattgtattggtttatgtaaaatgtcaaaaaatgacgattaaaaaggaacggaggta 23855811  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 35029751 - 35029800
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    ||||||||| |||||| | ||||||| |||||||||||||||| ||||||    
T  35029751 ttgatttgtataaaatgttaaaaaatgacaattaaaaaggaacggaggta 35029800  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 35296253 - 35296298
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  35296253 tttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 35296298  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 41701517 - 41701468
Alignment:
Q  137 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||||||||||||||||| ||||| | ||| |||||||||||| ||||||    
T  41701517 ttgatttgtgtaaaatattaaaaagtgacagttaaaaaggaacggaggta 41701468  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 43642020 - 43641979
Alignment:
Q  141 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 182  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  43642020 tttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacaga 43641979  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 3720871 - 3720927
Alignment:
Q  123 acttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 179  Q
    |||||||| |||||||  |||||||||||| | ||||| | ||||||||||||||||    
T  3720871 acttattgattgttttagtttgtgtaaaatgttaaaaagtgacaattaaaaaggaac 3720927  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 148503 - 148557
Alignment:
Q  132 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 186  Q
    |||| ||| ||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  148503 ttgtcttggtttatgtaaaatgtcaaaatataacaattaaaaaggaacggaggta 148557  T

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