View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_1 (Length: 933)
Name: NF11133_low_1
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 478 - 903
Target Start/End: Complemental strand, 926560 - 926128
Alignment:
| Q |
478 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattacttcact |
577 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
926560 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcagccttgaaatccattacttcact |
926461 |
T |
|
| Q |
578 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatgactttat----aaatagcctaaaaataaacacttgttga |
673 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
926460 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatgactttatttataaatagcctaaaaataaacacttgttga |
926361 |
T |
|
| Q |
674 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaaga---gatcatcgatttgaacc |
770 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
926360 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaagaagagatcatcgatttgaacc |
926261 |
T |
|
| Q |
771 |
aaatcacactccgatcctttcatctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggccaagttctggggggaaccttacaccag |
870 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926260 |
aaatcacactccgatcctttaatctttctgaccttgatgatgtaatggtgtggcagactgatgaaaaagtggccaagttctggggggaaccttacaccag |
926161 |
T |
|
| Q |
871 |
caaagaccaaggcatcaacttcatcaaaaatat |
903 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
926160 |
caaagaccaaggcatcaacttcattgaaaatat |
926128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 194 - 473
Target Start/End: Complemental strand, 927297 - 927018
Alignment:
| Q |
194 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaagctatataaaattgtggtagattagt |
293 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
927297 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaaggtatataaaattgtggtagattagt |
927198 |
T |
|
| Q |
294 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
927197 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
927098 |
T |
|
| Q |
394 |
gatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaacaactaaaatcac |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
927097 |
gatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaacaactaaaatcac |
927018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 744 - 914
Target Start/End: Complemental strand, 935740 - 935570
Alignment:
| Q |
744 |
ccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggc |
843 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||| | ||||||||||| ||||||||||||||||| |
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| T |
935740 |
ccaaagaagagatcattgatttgaaccaaatcacactccgatcttttaatctttctgacctcgatgatctcatggtgtggcacactgatgaaaaagtggc |
935641 |
T |
|
| Q |
844 |
caagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagt |
914 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935640 |
caagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagt |
935570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 710 - 894
Target Start/End: Complemental strand, 928641 - 928454
Alignment:
| Q |
710 |
atggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatg |
809 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
928641 |
atggaggaaacttttatttcttcaaaaccatgtggcaaagaagaaatcattgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatg |
928542 |
T |
|
| Q |
810 |
atgtaatggtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcat |
894 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| | |||||||||||||| |
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| T |
928541 |
atgtaatggtgtggcatactgatgaaaaggtggccaagttctgctcttgggaaccttacaccagcagagaagatggcatcaacttcat |
928454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 928013 - 927849
Alignment:
| Q |
26 |
tccaactttaataagtttcatttttcaatcataattttcttttaatattgaaatctatctttagaatcaattctgatgtattacannnnnnnnnnnnnng |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
928013 |
tccaactttaatacgtttcatttttcaatcataattttcttttaatattgaaatctatctttagaatcaattctgatgtattaca-tttttctttttttg |
927915 |
T |
|
| Q |
126 |
tgatatttgaggtttgccttgttaagaaaggaaagtaacaggcaagcgaagttaaaacagtcttag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
927914 |
tgatatttgaggtttgccttgttaagaaaggaaagtaataggcaagcgaagttaaaacagttttag |
927849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 707 - 903
Target Start/End: Complemental strand, 939569 - 939370
Alignment:
| Q |
707 |
gttatggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttg |
806 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||| ||| ||| | | ||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
939569 |
gttatggaggaaacttttatttcttccaaaccaagtggcaatgaacaaagcattgatttgaaccaaatcacactccgaccttttcatctttctgaccttg |
939470 |
T |
|
| Q |
807 |
atgatgtaatggtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatat |
903 |
Q |
| |
|
||||| | ||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
939469 |
atgatctcatggtatggagaactgatgaaaaagtggccaagttctgctcttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatat |
939370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 718 - 852
Target Start/End: Complemental strand, 924278 - 924144
Alignment:
| Q |
718 |
aacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatg |
817 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||| || ||| | | |||||||||||||||| || || |||||||||||||||||||| | ||| |
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| T |
924278 |
aacttctatttcttccaaaccaggtgccaaagaagagagaattgatctaacccaaatcacactccgaccccttaatctttctgaccttgatgatctcatg |
924179 |
T |
|
| Q |
818 |
gtgtggcatactgatgaaaaagtggccaagttctg |
852 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |
|
|
| T |
924178 |
atatggacaactgatgaaaaagtggccaagttctg |
924144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 924555 - 924473
Alignment:
| Q |
490 |
ttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattact |
572 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
924555 |
ttcataggcttggatccattttaatgcatattcaagtcaaccatggcaggcagagacataaagcagccttgaaatcccttact |
924473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 928110 - 928079
Alignment:
| Q |
1 |
atgtttagtgttctttctaatgatctccaact |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
928110 |
atgtttagtgttctttctaatgatctccaact |
928079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 848
Target Start/End: Complemental strand, 46648477 - 46648422
Alignment:
| Q |
793 |
tctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggccaagt |
848 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
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|
| T |
46648477 |
tctttctgatcttgatgatgttttggtgtggactagtgatgaaaaagtggccaagt |
46648422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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