View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_10 (Length: 536)
Name: NF11133_low_10
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 10202385 - 10201868
Alignment:
| Q |
1 |
tgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaactatttcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202385 |
tgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaactatttcctc |
10202286 |
T |
|
| Q |
101 |
taccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttctacatatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202285 |
taccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttctacatatcc |
10202186 |
T |
|
| Q |
201 |
aatttttcccgaggcgacatgcctgttatagaaatcaaccatgaagttattgtcaatctcatcgttcgcagtttcttccccagacaacgacattaaaatc |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
10202185 |
aatttttcccgaagcgacatgcctgttataaaaatcaaccatgaagttattgtcaatctcatcattcgcagtctcttccccggacaacgacattaaaatc |
10202086 |
T |
|
| Q |
301 |
tctttttccttagattgtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaagttaattcgaggacatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10202085 |
tctttttccttagattgtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaagttaattcgagggcatt |
10201986 |
T |
|
| Q |
401 |
ttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctccnnnnnnnngtgttgcaacattttgaatggtttcagattctattagttccga |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201985 |
ttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctccaaaaaaaagtgttgcaacattttgaatggtttcagattctattagttccga |
10201886 |
T |
|
| Q |
501 |
gaaaccaaatgacgtagt |
518 |
Q |
| |
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|||||||||||| ||||| |
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| T |
10201885 |
gaaaccaaatgatgtagt |
10201868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 51741584 - 51741139
Alignment:
| Q |
1 |
tgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaactatttcctc |
100 |
Q |
| |
|
||||||||||| ||||||||||| || | ||||||||| | |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
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| T |
51741584 |
tgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcctc |
51741485 |
T |
|
| Q |
101 |
taccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttctacatatcc |
200 |
Q |
| |
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||||||| |||| ||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||| |||||| |||||||| ||||| |||||||| |
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| T |
51741484 |
taccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatcc |
51741385 |
T |
|
| Q |
201 |
aatttttcccgaggcgacatgcctgttatagaaatcaaccatgaagttattgtcaatctcatcgttcgcagtttcttccccagacaacgacattaaaatc |
300 |
Q |
| |
|
||| | ||| || || |||| ||||||||| ||||||||||| || |||||||||||||| ||| |||| |||||||| || || ||||||||||| |
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| T |
51741384 |
aatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatctca---ttcacagtctcttcccctgataaagacattaaaatt |
51741288 |
T |
|
| Q |
301 |
tctttttccttagattgtactccacttttatcaatttgttcattttctaatttagac---gacaacaaaaatctaatgattgtcaagttaattcgaggac |
397 |
Q |
| |
|
|||||||| | | |||||||||||||| ||||| ||||| || | | | |||| ||||| |||||||| |||||||||| ||||| ||||| | |
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|
| T |
51741287 |
tctttttcatcatattgtactccactt---tcaatatgttctttatgtgacaaagacgaagacaaaaaaaatctgatgattgtcagattaatgcgagggc |
51741191 |
T |
|
| Q |
398 |
attttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctcc |
449 |
Q |
| |
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|||||||||| | |||||||||||| | |||||| || || ||||| ||||| |
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|
| T |
51741190 |
attttgaaattcttaggctccaagctatagcctcacgatcgtccgggcctcc |
51741139 |
T |
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