View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_12 (Length: 454)
Name: NF11133_low_12
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 55 - 436
Target Start/End: Original strand, 338127 - 338509
Alignment:
| Q |
55 |
ttgaaaaacacgtctagatatattatatgtattgatcttacgtgttcatgctaacttgcttaaatagctgttagcagaaatattggcttttaaacactaa |
154 |
Q |
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| T |
338127 |
ttgaaaaacacgtctagatatattatatgtattgatcttacgtgttcatgctaacttgcttaaatagctgttagcagaaatattggcttttaaacactaa |
338226 |
T |
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| Q |
155 |
aatcaagctttgaaggcgtttttgactccttaacttt-aaaaagttaggattttgaaccctctagcaaaaatataacaattttgctctctaatttttaac |
253 |
Q |
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| T |
338227 |
aatcaagctttaaaggcgtttttgactccttaacttttaaaaagttgggattttgaaccctctagcaaaaatataacaattttgctctctaatttttaac |
338326 |
T |
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| Q |
254 |
taatttcaaggttaaccaannnnnnngataaacttatttatatttgatctcaacctttgatccatacatacattcaacagcagctcatcaaaacaaccta |
353 |
Q |
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| T |
338327 |
taatttcaaggttaaccaatttttttgataaacttatttatatttgatctcaacctttgatccatacatacattcaacagcagctcatcaaaacaaccca |
338426 |
T |
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| Q |
354 |
tcataaacaacaacagctcatcaaaactatttattttcacctttgtacttttgcaaatcaagagagtaaatcacactctaaat |
436 |
Q |
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| T |
338427 |
tcataaacaacaacagctcatcaaaactatttattttcacctttgtacttttgcaaatcaagagagtaaatcacactctaaat |
338509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 9620715 - 9620656
Alignment:
| Q |
177 |
tgactccttaac-tttaaaaagttaggattttgaaccctctagcaaaaatataacaatttt |
236 |
Q |
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| T |
9620715 |
tgactccttaacctttaaaaagttatgattttgatccc-ctaacaaaaaaataacaatttt |
9620656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 33040111 - 33040182
Alignment:
| Q |
173 |
tttttgactccttaac-tttaaaaagttaggattttgaaccctctagcaaaaatataacaattttgctctcta |
244 |
Q |
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||||||||||| |||| ||||||||||| |||||| | ||||||| |||||| ||||||||||||| ||||| |
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| T |
33040111 |
tttttgactccctaacctttaaaaagttgtgatttt-acccctctaacaaaaaaataacaattttgccctcta |
33040182 |
T |
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