View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_15 (Length: 442)
Name: NF11133_low_15
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 38942939 - 38942531
Alignment:
| Q |
15 |
agagaaagagaaaggcacaacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctc |
114 |
Q |
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| T |
38942939 |
agagaaagagaaaggcacaacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctc |
38942840 |
T |
|
| Q |
115 |
aagctggtagaatcaaaactatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatgtttttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942839 |
aagctggtagaatcaaaactatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacagagtatgtttttt |
38942740 |
T |
|
| Q |
215 |
gttttaatttgttgtccagattcgcatcaaaattatagaaattgttcaagaattactaactctttatatgaaacagaatgctatgttcgtgccacactac |
314 |
Q |
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| T |
38942739 |
gttttaatttgttgtccagattcgcatcaaaattatagaaattgttcaagaattactaacgctttatatgaaacagaatgctatgttcgttccacactac |
38942640 |
T |
|
| Q |
315 |
aatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggcaacactgtgttcgatgaggaactagaag |
414 |
Q |
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| T |
38942639 |
aatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggcaacactgtgttcgatgaggaactagaag |
38942540 |
T |
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| Q |
415 |
ctggtcgtg |
423 |
Q |
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| T |
38942539 |
ctggccgtg |
38942531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 38950358 - 38950188
Alignment:
| Q |
32 |
caacggtcttgcggaaacaatttgcactgccaggcttcaccagaacatggtctcatcttcatcacctgacatctacaaccctcaagctggtagaatcaaa |
131 |
Q |
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||||||||||| ||||||||||||||| || || |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38950358 |
caacggtcttgaggaaacaatttgcaccgctagacttcgccagaacattggctcatcttcatcacctgacatctacaaccctgaagctggtagaatcaaa |
38950259 |
T |
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| Q |
132 |
actatcaccagcttcgacctcccagctctcaggtggctaagactcagtgctgagcatggaactctccacag |
202 |
Q |
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||| |||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
38950258 |
actgtcaccagctttgacctcccagctctaaggtggctcagactcagtgctgaacatggaactctccacag |
38950188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 287 - 421
Target Start/End: Complemental strand, 38950103 - 38949969
Alignment:
| Q |
287 |
acagaatgctatgttcgtgccacactacaatctcaatgcaaacagcataatattggcattgaatggacgtgcaaggctacaagtagtgaactgcaatggc |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
38950103 |
acagaatgctatgttcgtgccacactacaatctgaatgcaaacagcgcaatatacgcattgaggggacgtgcacggttacaagtagtgaactgcaatggc |
38950004 |
T |
|
| Q |
387 |
aacactgtgttcgatgaggaactagaagctggtcg |
421 |
Q |
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||||||||||| |||| ||||| ||||| ||||| |
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| T |
38950003 |
aacactgtgtttgatggcgaacttgaagccggtcg |
38949969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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