View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_17 (Length: 430)
Name: NF11133_low_17
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 42473863 - 42473466
Alignment:
| Q |
20 |
atcagatccctagtaaagggattaaagagagaaaaaatgcaatctctgtccaaactccgccagtcatgccggtttagcaataaccaaccatcttttgcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42473863 |
atcagatccctagtaaagggattaaagagagaaaaaatgcgatctctgtccaacctccgctagtcatgccggtttagcaataaccaaccatcttttgcat |
42473764 |
T |
|
| Q |
120 |
agcaaacacgacatccatccaactctggcaactcaagggaatagtcttacgctgcatagggtcataaaaatcataacaattaccaatttttgggaaatac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42473763 |
agcaaacacgacatccatccaactctggcaactcaagggaatagtcttacgctgcatagggtcataaaaatcataaaaattaccaatttttgggaaatac |
42473664 |
T |
|
| Q |
220 |
ataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaacagctgaagcacgaatattatccccaacatccaaac |
319 |
Q |
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||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42473663 |
ataagccgaggtgattggtccactacacgtacagaagtggcaactgaacaccatctcttgcaaacagctgaagcacggatattatccccaacatccaaac |
42473564 |
T |
|
| Q |
320 |
gagacaagaacaattccaagacttcagcagggagatcggcccatgtttgcagctccaaattgtccctttttacctcagcagcagctcttctattgtct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473563 |
gagacaagaacaattccaagacttcagcagggagatcggcccatgtttgcagctccaaattgtccctttttacctcagcagcagctcttctattgtct |
42473466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 42479401 - 42479009
Alignment:
| Q |
20 |
atcagatccctagtaaagggattaaagagagaaaaaatgcaatctctgtccaaactccgccagtcatgccggtttagcaataaccaaccatcttttgcat |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||| || || |||||| ||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
42479401 |
atcagatccctagtaaagggattaaagagagagaaaatgtgatttccgtccaacctccgccagtcctgccggtttagcaataaccaaccatcttttgtat |
42479302 |
T |
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| Q |
120 |
agcaaacacgacatccatccaactctggcaactcaagggaatag-tcttacgctgcatagggtcataaaaatcataacaattaccaatttttgggaaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
42479301 |
agcaaacacgacatccatccaactctggcaactcaagggaataggtcttacgctgaacagggtcatagaaatcataacaattacccttttttgggaaata |
42479202 |
T |
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| Q |
219 |
cataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaacagctgaagcacgaatattatccccaacatccaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42479201 |
cataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaacagctgaagcacgaatattatccccaatatccaaa |
42479102 |
T |
|
| Q |
319 |
cgagacaagaacaattccaagacttcagcagggagatcggcccatgtttgcagctccaaattgtccctttttacctcagcagcagctcttctattgtct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
42479101 |
cgagacaagaacaattccaagacttcagcagggagatcggcccatgtttgcagctccaaattgtcacttttta------cagcagctcttctattgtct |
42479009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 380
Target Start/End: Original strand, 26047145 - 26047439
Alignment:
| Q |
87 |
gccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata-gtcttacgctgcatagggtcata |
185 |
Q |
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|||||| ||||| ||||||||||||||||| || ||||| | | |||||| ||||||||| ||||||| |||||| ||||| ||||| | ||||||||| |
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| T |
26047145 |
gccggtatagcagtaaccaaccatcttttgtgtaacaaactctagatccattcaactctggaaactcaatggaataggtcttccgctgaacagggtcata |
26047244 |
T |
|
| Q |
186 |
aaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaaca |
285 |
Q |
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|| ||||| || | ||||| ||| || |||||||| | ||| |||||||||| | | ||||||| | ||||||| || ||| |||||||||||| |
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| T |
26047245 |
gaattcataccactgaccaaatttcggaaaatacatcaaccatggtgattggttcaccatgcgtacagcattggcaacaaaattccaactcttgcaaaca |
26047344 |
T |
|
| Q |
286 |
gctgaagcacgaatattatccccaacatccaaacgagacaagaacaattccaagacttcagcagggagatcggcccatgtttgcagctccaaatt |
380 |
Q |
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|| |||||||| | ||||||| | | | |||||||| | || || ||| || | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
26047345 |
gcagaagcacggacattatcctctaaggctaaacgagatatgatcatttctaatagttcagcagggagatcagcccatgtttgcagctccaaatt |
26047439 |
T |
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