View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_25 (Length: 350)
Name: NF11133_low_25
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 88 - 350
Target Start/End: Complemental strand, 11247645 - 11247386
Alignment:
| Q |
88 |
acaaaaagacgatacacactccgcaccgaataatgcccattcttctcgggtt-ccacactaataatctatttgtattctttactttttgtctttacaaac |
186 |
Q |
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| T |
11247645 |
acaaaaagaccatatacactccgcaccgaataatgcccattcttctcgggtttccacactaat---ctatttgtattctttagtttttgtctttaaaaac |
11247549 |
T |
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| Q |
187 |
agaaatttatataaacannnnnnnaaatcttaagagatgtatcaatcttgtggtcgaagttcaccgttttgaataataacaataataataattctttttg |
286 |
Q |
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| T |
11247548 |
agaaatttatataaacatttttt-aaatcttaagagatgaatcaatcttgtgttcgaagttcaccattttgaataataacaataataatgattctttttg |
11247450 |
T |
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| Q |
287 |
gaaataaagagtgtcagatgctgaagaagcactaaacaacgtctagactagagatggcaactcc |
350 |
Q |
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| T |
11247449 |
gaaataaagagtgtcagatgctgaagaatgactaaacaacaattagtctagagatggcaactcc |
11247386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 29206623 - 29206511
Alignment:
| Q |
22 |
ttcaacctcaaagttccactccaataaccattctttcataggtggttattatccacaatatcttcgacaaaaagacgatacacactccgcaccgaataat |
121 |
Q |
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| T |
29206623 |
ttcaacttccaaattccactccaataaccactccttctcaggtgtgtattattcacaatatctttgacacaaagacgatacgcacttggtaccgaataat |
29206524 |
T |
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| Q |
122 |
gcccattcttctc |
134 |
Q |
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| T |
29206523 |
gcccattcttctc |
29206511 |
T |
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