View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_27 (Length: 342)
Name: NF11133_low_27
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 52512066 - 52512387
Alignment:
| Q |
18 |
caattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacctaaatgaaa-- |
115 |
Q |
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| T |
52512066 |
caattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacctaaatgaaatg |
52512165 |
T |
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| Q |
116 |
--------agtagtattataataaggaagaagaatattattatta-----------aaaaagaatgaggagaaaagagaagaggactcacaaatgatgtt |
196 |
Q |
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||||||||||||||||||||||| | ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52512166 |
aaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaagagaagaggactcacaaatgatgtt |
52512265 |
T |
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| Q |
197 |
accacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaacacaaacattta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512266 |
accacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaacacaaacattta |
52512365 |
T |
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| Q |
297 |
agacattgacgcctcgaaacaa |
318 |
Q |
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|||||||||||||||||||||| |
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| T |
52512366 |
agacattgacgcctcgaaacaa |
52512387 |
T |
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