View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_29 (Length: 341)
Name: NF11133_low_29
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_29 |
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| [»] scaffold0328 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 30835319 - 30835640
Alignment:
| Q |
1 |
caatgttgacaatcaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtaggaggag |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835319 |
caatgttgacaatgaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtaggaggag |
30835418 |
T |
|
| Q |
101 |
agtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcatcatttgtatcccatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835419 |
agtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcatcatttgtatcccatct |
30835518 |
T |
|
| Q |
201 |
tcaaataactctcttatttcattttcctttatctttaatgctttttcaatatgaccaacaataaccatagctatatttttcatttcttgcgagtataact |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30835519 |
tcaaataactctcttatttcattttccttaatctttaatgctttttcaatatgaccaacaataaccatagctttatttttcatttcttgcgagtataact |
30835618 |
T |
|
| Q |
301 |
ctagtgtgtctctgcatgataa |
322 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
30835619 |
cgagtgtgtctctgcatgataa |
30835640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 30839932 - 30840253
Alignment:
| Q |
1 |
caatgttgacaatcaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtaggaggag |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||||||||||| | || ||||||||| || | |||||||||||||||||||||| ||||| |
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| T |
30839932 |
caatgttgacaatgaaggcattgggaaggggtttaacaggaacccacatgcaatttttccttatctgtaacccttctacttcattgagttgtaagaggat |
30840031 |
T |
|
| Q |
101 |
agtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcatcatttgtatcccatct |
200 |
Q |
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||| | |||| ||| || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
30840032 |
agtgagacctacagggtctgaatgatttgtgagaccaataaccttctctggttgaggacaaggtgggtaatagttcgtcctcatcatttgtatcccatct |
30840131 |
T |
|
| Q |
201 |
tcaaataactctcttatttcattttcctttatctttaatgctttttcaatatgaccaacaataaccatagctatatttttcatttcttgcgagtataact |
300 |
Q |
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|||||||| ||||||||||| |||||| ||||| || | ||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||||| | |
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| T |
30840132 |
tcaaataattctcttatttccatttcctccatcttcaaagatttttcaatatgaccaagaataaccatggctagatttttaatttcttgtgagtataatt |
30840231 |
T |
|
| Q |
301 |
ctagtgtgtctctgcatgataa |
322 |
Q |
| |
|
| || ||||||||||||||||| |
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| T |
30840232 |
cgagagtgtctctgcatgataa |
30840253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30827956 - 30828139
Alignment:
| Q |
1 |
caatgttgacaatcaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtaggaggag |
100 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| |||| |
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|
| T |
30827956 |
caatgttaacaatgaaggcattaggcaggggtttaacaggaacccacataccatctttcctcacttggagcccttctacatcattgagttgtagaaggat |
30828055 |
T |
|
| Q |
101 |
agtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcat |
184 |
Q |
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||| | | ||| ||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
30828056 |
agtgagtgcagatccatctgaatggggtgttaggccaataaccttttctggttgtggacatggagggtaatagttcatcctcat |
30828139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30852849 - 30853032
Alignment:
| Q |
1 |
caatgttgacaatcaaggcattgggcaggggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttgtaggaggag |
100 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| |||| |
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| T |
30852849 |
caatgttaacaatgaaggcattaggcaggggtttaacaggaacccacataccatctttcctcacttggagcccttctacatcattgagttgtagaaggat |
30852948 |
T |
|
| Q |
101 |
agtaacaccttgaggatccgaatgatttgtgaggccaataaccttttctggttgaggacaaggagggtaatagttcatcctcat |
184 |
Q |
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||| | | ||| ||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
30852949 |
agtgagtgcagatccatctgaatggggtgttaggccaataaccttttctggttgtggacatggagggtaatagttcatcctcat |
30853032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 8824 - 8787
Alignment:
| Q |
147 |
tctggttgaggacaaggagggtaatagttcatcctcat |
184 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
8824 |
tctggttgaggacatggagggtaataattcatcctcat |
8787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 258482 - 258519
Alignment:
| Q |
147 |
tctggttgaggacaaggagggtaatagttcatcctcat |
184 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |
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| T |
258482 |
tctggttgaggacaaggagggtaataattcattctcat |
258519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 26914245 - 26914306
Alignment:
| Q |
30 |
ggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttg |
91 |
Q |
| |
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||||||| ||||| |||||| |||||||| ||||||| || ||||||| |||||||||||| |
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|
| T |
26914245 |
ggcttaataggaatccacattccatctttttttatttgaaggccttctatttcattgagttg |
26914306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 21211985 - 21211924
Alignment:
| Q |
30 |
ggcttaacaggaacccacataccatctttccttatttggagaccttctacttcattgagttg |
91 |
Q |
| |
|
||||||| ||||| |||||| |||||||| ||||||| || ||||||| |||||||||||| |
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|
| T |
21211985 |
ggcttaataggaatccacattccatctttttttatttgaaggccttctatttcattgagttg |
21211924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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