View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_30 (Length: 341)
Name: NF11133_low_30
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 5135011 - 5135328
Alignment:
| Q |
3 |
cagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatgcaactta |
102 |
Q |
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| T |
5135011 |
cagcttttaacccgaatcacgactatgacactgttagtcaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatgcaactta |
5135110 |
T |
|
| Q |
103 |
taatcacatttcagtatcaggatgctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttccaaactgcacactcattc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135111 |
taatcacatttcagtatcaggatgctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttccaaactgcacactcattc |
5135210 |
T |
|
| Q |
203 |
aactagtttagggtgtgccctaattgtgaattggagaggaaggtagcaaaactgtcccacattgagctaaataatctcttgtcaataatcgcaatcaagg |
302 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
5135211 |
aactagtttagagt-acccctaattgtgaattggagaggaaggtagcataactgtcccacattgagctaaataatgtcttgtcaattatcgcaatcaagg |
5135309 |
T |
|
| Q |
303 |
aaagatttatggtgagcac |
321 |
Q |
| |
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|||||||||||||| |||| |
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| T |
5135310 |
aaagatttatggtgggcac |
5135328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 5099743 - 5100053
Alignment:
| Q |
3 |
cagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatgcaactta |
102 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
5099743 |
cagcttttaacccgaatcacgactatgacactgttagccaccactaagtacatagttgaagccagattattcagcttttagcgtcgcctaatacaactta |
5099842 |
T |
|
| Q |
103 |
taat------cacatttcagtatcaggatg---ctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttccaaactgca |
193 |
Q |
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|||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| ||||||||| ||| |
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| T |
5099843 |
taatacgcatcacatttcagtatcaggatgatgctgcctcccatggtttctgcaaactcctc--------------ccccttggtggcttccaaaccgca |
5099928 |
T |
|
| Q |
194 |
cactcattcaactagtttagggtgtgccctaattgtgaattggagaggaaggtagcaaaactgtcccacattgagctaaataatctcttgtcaataatcg |
293 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| || ||||||||||| |||| ||| ||||||||| ||||| ||||||||||||||||| |
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| T |
5099929 |
cactcattcaactagtttagggtg--cactaattgtgaattgaagtggaaggtagcataactctcctacattgagc-aaatactctcttgtcaataatcg |
5100025 |
T |
|
| Q |
294 |
caatcaaggaaagatttatggtgagcac |
321 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
5100026 |
caatcaaggaaagatttatggtgggcac |
5100053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 5058123 - 5057851
Alignment:
| Q |
8 |
tttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg-------caact |
100 |
Q |
| |
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|||||| ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||| | ||| |
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| T |
5058123 |
tttaactccagtcacgattatgacactgttagccaccactaaatacatagttgaagccagattgttcagcttttatcgtcacctaatgtgacaggcgact |
5058024 |
T |
|
| Q |
101 |
tataat------cacatttcagtatcaggatgctgtctcccatggtttctgcaaactcctcttctgtgcagcttactccttggtgacttccaaactgcac |
194 |
Q |
| |
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|||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||| ||||||| |||||||||||||| |
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| T |
5058023 |
tataatatgcagcacatttcagtatcaggatgctgccacccatggtttctgcaaa----------gtgcagcctacttcttggtggcttccaaactgcac |
5057934 |
T |
|
| Q |
195 |
actcattcaactagtttagggtgtgccctaattgtgaattggagaggaaggtagcaaaactgtcccacattgagctaaataat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||| | ||||||| |
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| T |
5057933 |
actcattcaactagtttagggtgtgccctaattgtgaattggagtggaaggtagtatatctgtcccacattgaccaaaataat |
5057851 |
T |
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