View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_low_32 (Length: 336)

Name: NF11133_low_32
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_low_32
NF11133_low_32
[»] chr6 (2 HSPs)
chr6 (14-317)||(5574297-5574612)
chr6 (70-317)||(5569319-5569566)
[»] chr3 (11 HSPs)
chr3 (75-199)||(30201116-30201240)
chr3 (75-199)||(30227291-30227415)
chr3 (74-215)||(29856788-29856929)
chr3 (75-199)||(30214663-30214786)
chr3 (76-215)||(29648978-29649117)
chr3 (265-308)||(30214843-30214886)
chr3 (264-305)||(30201296-30201337)
chr3 (151-199)||(30239053-30239101)
chr3 (162-199)||(36309774-36309811)
chr3 (162-199)||(36333955-36333992)
chr3 (75-215)||(29712923-29713063)
[»] chr1 (2 HSPs)
chr1 (124-199)||(16966196-16966271)
chr1 (124-199)||(16955678-16955753)
[»] chr5 (3 HSPs)
chr5 (76-215)||(11634908-11635047)
chr5 (146-198)||(16053597-16053649)
chr5 (142-182)||(25784312-25784352)
[»] chr8 (2 HSPs)
chr8 (111-215)||(1152921-1153025)
chr8 (75-199)||(14934515-14934639)
[»] chr7 (2 HSPs)
chr7 (75-199)||(16644754-16644878)
chr7 (75-199)||(17619115-17619239)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 5574612 - 5574297
Alignment:
Q  14 cactatcaaccgttctatgcaatttctcatatatgatgg---caaatgaagtagaaggt---------aatatgccaaattggcttgcacttccaagaga 101  Q
    |||||||||| ||||||| | |||||||||||||||||    |||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  5574612 cactatcaacagttctattcgatttctcatatatgatgatgacaaatgaagtagaaggtgagagaacaaatatgccaaattggcttgcacttccaagaga 5574513  T
Q  102 catcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcgt 201  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5574512 catcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcgt 5574413  T
Q  202 gtgtggcgtaccatgcagattaacatgaccaatcgtcgcnnnnnnncacgcttctttcctccagatttggtgaagatttgtcgttatgctgttgatcgaa 301  Q
    ||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5574412 gtgtggcataccatgcagattaacatgaccaatcgtcgctttttttcacgcttctttcctccagatttggtgaagatttgtcattatgctgttgatcgaa 5574313  T
Q  302 gttgcggatttttgat 317  Q
    ||||||||||||||||    
T  5574312 gttgcggatttttgat 5574297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 70 - 317
Target Start/End: Complemental strand, 5569566 - 5569319
Alignment:
Q  70 aatatgccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5569566 aatatgccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtc 5569467  T
Q  170 ctctatggtggaacatttgcaaggatcctcgtgtgtggcgtaccatgcagattaacatgaccaatcgtcgcnnnnnnncacgcttctttcctccagattt 269  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  5569466 ctctatggtggaacatttgcaaggatcctcttgtgtggcgtaccatgcagattaacatgaccaatcgtcgctttttttcacgcttctttcctccagattt 5569367  T
Q  270 ggtgaagatttgtcgttatgctgttgatcgaagttgcggatttttgat 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  5569366 ggtgaagatttgtcattatgctgttgatcgaagttgcggatttttgat 5569319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 30201116 - 30201240
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    |||||||||||||| |||||| | |||||| || |  ||||| ||||||||||||  ||| |||||  | || |||||||||||||||||||||||||||    
T  30201116 gccaaattggcttgaacttcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcctcta 30201215  T
Q  175 tggtggaacatttgcaaggatcctc 199  Q
    |||||||||||||||||||||||||    
T  30201216 tggtggaacatttgcaaggatcctc 30201240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 30227291 - 30227415
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    |||||||||||||| |||||| |||||||||||    ||||| ||||||||||||| ||| || ||  | || |||||||||||||||||||||||||||    
T  30227291 gccaaattggcttgaacttcctagagacatcacaacaaacattcttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcctcta 30227390  T
Q  175 tggtggaacatttgcaaggatcctc 199  Q
    | |||||||||||||||||||||||    
T  30227391 tagtggaacatttgcaaggatcctc 30227415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 29856788 - 29856929
Alignment:
Q  74 tgccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctct 173  Q
    ||||||||||||||| |||||  ||||| ||||| |  |||||||||||||||||||||||||||||  | || | ||||||||||||||| ||||||||    
T  29856788 tgccaaattggcttgaacttctgagagaaatcacagcaaacatccttcaaaggcttgatacaattgaaatcgtgaaaagtgcatgtcaagtttgtcctct 29856887  T
Q  174 atggtggaacatttgcaaggatcctcgtgtgtggcgtaccat 215  Q
    ||||||| |||| || || |||||||   |||||||||||||    
T  29856888 atggtgggacatatgtaaagatcctctcctgtggcgtaccat 29856929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 30214663 - 30214786
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    |||||||||||||| |||||| |||||||||||    |||||  ||||||| |||| ||| |||||  | || |||||||||||||||||||||||||||    
T  30214663 gccaaattggcttgaacttcctagagacatcacaacaaacatt-ttcaaagacttggtaccattgagattgtgacaagtgcatgtcaagtgtgtcctcta 30214761  T
Q  175 tggtggaacatttgcaaggatcctc 199  Q
    |||||||||||||||||||||||||    
T  30214762 tggtggaacatttgcaaggatcctc 30214786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 29648978 - 29649117
Alignment:
Q  76 ccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctctat 175  Q
    ||||||||||||| ||||||||||||||||||  | |||||||||||| |  |||||||  ||||  | ||||||| |||||| | ||| ||||||||||    
T  29648978 ccaaattggcttgaacttccaagagacatcacaattaacatccttcaaggagttgatactgttgaaattgtaacaaatgcatgcctagtatgtcctctat 29649077  T
Q  176 ggtggaacatttgcaaggatcctcgtgtgtggcgtaccat 215  Q
     |||||||||||| ||||||||||   |||||||||||||    
T  29649078 cgtggaacatttgtaaggatcctctcatgtggcgtaccat 29649117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 30214843 - 30214886
Alignment:
Q  265 gatttggtgaagatttgtcgttatgctgttgatcgaagttgcgg 308  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  30214843 gatttggtaaagatttgtcgttatgctgttgaacgaagttgcgg 30214886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 30201296 - 30201337
Alignment:
Q  264 agatttggtgaagatttgtcgttatgctgttgatcgaagttg 305  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  30201296 agatctggtaaagatttgtcgttatgctgttgatcgaagttg 30201337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 30239053 - 30239101
Alignment:
Q  151 agtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 199  Q
    |||||||| | ||| |||||||||||||||||||| |||||||||||||    
T  30239053 agtgcatgcctagtatgtcctctatggtggaacatatgcaaggatcctc 30239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 36309811 - 36309774
Alignment:
Q  162 agtgtgtcctctatggtggaacatttgcaaggatcctc 199  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  36309811 agtgtgtccgcaatggtggaacatttgcaaggatcctc 36309774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 36333992 - 36333955
Alignment:
Q  162 agtgtgtcctctatggtggaacatttgcaaggatcctc 199  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  36333992 agtgtgtccacaatggtggaacatttgcaaggatcctc 36333955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 29712923 - 29713063
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    |||||||||||||| |||||||| |||| | | |  |||||| || ||||| ||||||||  ||||  | || ||||||||| || | || ||| || |     
T  29712923 gccaaattggcttgaacttccaatagacctgatgaagaacatactccaaagacttgatactgttgaaattgtgacaagtgcacgtaatgtttgttctttg 29713022  T
Q  175 tggtggaacatttgcaaggatcctcgtgtgtggcgtaccat 215  Q
    ||| |||| ||||||||||||||||   |||||||||||||    
T  29713023 tggcggaatatttgcaaggatcctctaatgtggcgtaccat 29713063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 16966271 - 16966196
Alignment:
Q  124 aggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 199  Q
    ||||||||||| |||||  |||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  16966271 aggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatcctc 16966196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 16955753 - 16955678
Alignment:
Q  124 aggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 199  Q
    ||||||||||| |||||  | || ||||||| |||||||||||| ||| |||||||||| ||||||||||||||||    
T  16955753 aggcttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctc 16955678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 11634908 - 11635047
Alignment:
Q  76 ccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctctat 175  Q
    ||||||||||||| |||||| | ||||||||     ||||| ||||  ||||||||||| |||||  |||||| || |||||||  ||| ||||||||||    
T  11634908 ccaaattggcttgaacttccgacagacatcataacaaacattcttcggaggcttgataccattgacatagtaaaaaatgcatgtatagtatgtcctctat 11635007  T
Q  176 ggtggaacatttgcaaggatcctcgtgtgtggcgtaccat 215  Q
    |||||| ||| |||||||||||||   |||||||||||||    
T  11635008 ggtggagcatatgcaaggatcctctcatgtggcgtaccat 11635047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 16053649 - 16053597
Alignment:
Q  146 taacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcct 198  Q
    |||||||||||||   |||||| ||||| ||||||||||||||||||||||||    
T  16053649 taacaagtgcatgcggagtgtgccctctttggtggaacatttgcaaggatcct 16053597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 25784352 - 25784312
Alignment:
Q  142 gtagtaacaagtgcatgtcaagtgtgtcctctatggtggaa 182  Q
    ||||| ||||||| |||||||||||| ||||||||||||||    
T  25784352 gtagttacaagtgtatgtcaagtgtgccctctatggtggaa 25784312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 1153025 - 1152921
Alignment:
Q  111 gaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcgtgtgtggcgt 210  Q
    ||||||||||||||| || |||||  ||||  | |||||||||||| || | || |||||||| |||||| ||||||||||||||||||   ||||||||    
T  1153025 gaacatccttcaaagactggatactgttgaaattgtaacaagtgcacgtaatgtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgt 1152926  T
Q  211 accat 215  Q
    |||||    
T  1152925 accat 1152921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 14934639 - 14934515
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    |||||||||||||| ||||||||||||  | || |  ||||| || |||||||||| | | |||||  || |  | ||||||||||||||||| |||||     
T  14934639 gccaaattggcttgaacttccaagagatgtgactgcaaacattctccaaaggcttggtgccattgaaatattggctagtgcatgtcaagtgtgccctctt 14934540  T
Q  175 tggtggaacatttgcaaggatcctc 199  Q
    |||||||| |||| |||||||||||    
T  14934539 tggtggaatattttcaaggatcctc 14934515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 16644878 - 16644754
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    ||||||||||||||  ||||| ||||| |||||    ||||| |||||||||||| || || ||||  | || ||||||||||  | ||||||| |||||    
T  16644878 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 16644779  T
Q  175 tggtggaacatttgcaaggatcctc 199  Q
    |||||||||||||||||||| ||||    
T  16644778 tggtggaacatttgcaaggaacctc 16644754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 17619239 - 17619115
Alignment:
Q  75 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatacaattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 174  Q
    ||||||||||||||  ||||| ||||| |||||    ||||| |||||||||||| || || ||||  | || ||||||||||  | ||||||| |||||    
T  17619239 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 17619140  T
Q  175 tggtggaacatttgcaaggatcctc 199  Q
    |||||||||||||||||||| ||||    
T  17619139 tggtggaacatttgcaaggaacctc 17619115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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