View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_33 (Length: 332)
Name: NF11133_low_33
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_33 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 7204935 - 7205262
Alignment:
| Q |
5 |
tcaaagtgatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtgtgttattttcattaacgcattagtttgttttagcatataccca |
104 |
Q |
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| T |
7204935 |
tcaaagggatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtttgttatttttgttaacgcattagtttgttttagcatatgccca |
7205034 |
T |
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| Q |
105 |
attggcggagtgttaatgaactgatctatagttgtcaaagcctaagggtttgtggtccaaaaggtctaaacaagtgttgtcaatcgtggatcatagaaaa |
204 |
Q |
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| T |
7205035 |
attggcggagtgttaatggactgatctatagttgtcaaagcctaagggttcgtggtccaaaaggtctaaacaagtgttgtcaatcgtggatcatagaaaa |
7205134 |
T |
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| Q |
205 |
tagtgattatttaaattctacgcaacaatgctgtagtcccgctgtaactgttattgaccacattttgttagcgtatggcagagcaacactggtccaagcc |
304 |
Q |
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| T |
7205135 |
tagtgattatttaaattctacgcaacaatgttgaagtcccgctgtaactgttattgacaacattttgttagcgtatggcggagcaacactggtctaagcc |
7205234 |
T |
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| Q |
305 |
aattgattttcatcccactttagtcttc |
332 |
Q |
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| T |
7205235 |
atttgatcttcatcccactttagtcttc |
7205262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 116 - 332
Target Start/End: Original strand, 7198121 - 7198341
Alignment:
| Q |
116 |
gttaatgaactgatctatagttgtcaaagcctaagggtttgtggtccaaaaggtctaaacaagtgttgtcaatcgtggatcatagaaaatagtgatt-at |
214 |
Q |
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| T |
7198121 |
gttaatggactgatctatagttgtcaaagcctaggggttcatggtccaaaaggtctaaacaagtgttgtcaatcgcagatcatagaaaagatcaattcat |
7198220 |
T |
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| Q |
215 |
ttaaattc---tacgcaacaatgctgtagtcccgctgtaactgttattgaccacattttgttagcgtatggcagagcaacactggtccaagccaattgat |
311 |
Q |
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| T |
7198221 |
tcaaattccactacgcaacaatgctatagtgccgttataactgttattgacaacattttgttagtgtatggcggatcaacactggtttaagccatttgat |
7198320 |
T |
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| Q |
312 |
tttcatcccactttagtcttc |
332 |
Q |
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| T |
7198321 |
tttcatcccactttagtcttc |
7198341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 7211500 - 7211777
Alignment:
| Q |
5 |
tcaaagtgatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtgtgttattttcattaacgcattagtttgttttagcatataccca |
104 |
Q |
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| T |
7211500 |
tcaaagggatacaagattgatgcatgggaatttggtatgacaatagacaaagtattttgttattgttgttaatgcattagtttgttttagcatctgccca |
7211599 |
T |
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| Q |
105 |
attggcggagtgttaatgaactgatctatagttgtcaaagcctaagggtttgtggtccaaaaggtctaaacaagtgttgtcaatcgtggatcatagaaaa |
204 |
Q |
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| T |
7211600 |
attggcagagcgttaatggactgatctatagttgtcaaag-----gggttcatggtccaaaaggtctaaac-agtgttgtaaatcgcggatcacataaaa |
7211693 |
T |
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| Q |
205 |
tagtgatt-atttaaatt---ctacgcaacaatgctgtagtcccgctgtaactgttat-tgaccacattttgttagcgtatggc |
283 |
Q |
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| T |
7211694 |
tagtgattcattcaaattccactacgcaacagtgctattgtgccgctataaatgttatctgataacattttgctagcgtatggc |
7211777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 7198054 - 7198125
Alignment:
| Q |
5 |
tcaaagtgatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtgtgttattttcattaa |
76 |
Q |
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| T |
7198054 |
tcaaagggatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtttgttattttcgttaa |
7198125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 45599610 - 45599642
Alignment:
| Q |
177 |
agtgttgtcaatcgtggatcatagaaaatagtg |
209 |
Q |
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| T |
45599610 |
agtgtagtcaatcgtggatcatagaaaatagtg |
45599642 |
T |
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