View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_low_36 (Length: 313)

Name: NF11133_low_36
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_low_36
NF11133_low_36
[»] chr5 (5 HSPs)
chr5 (18-305)||(14959509-14959796)
chr5 (135-202)||(4855594-4855661)
chr5 (163-202)||(14257346-14257385)
chr5 (165-204)||(30845200-30845239)
chr5 (162-209)||(35135811-35135858)
[»] chr7 (4 HSPs)
chr7 (163-195)||(3501115-3501147)
chr7 (138-213)||(25507236-25507311)
chr7 (163-197)||(2221851-2221885)
chr7 (165-197)||(22388576-22388608)
[»] chr1 (4 HSPs)
chr1 (164-204)||(21516252-21516292)
chr1 (165-196)||(24153164-24153195)
chr1 (164-196)||(23902213-23902245)
chr1 (170-202)||(35666981-35667013)
[»] chr2 (2 HSPs)
chr2 (137-196)||(10150657-10150716)
chr2 (164-203)||(33197390-33197429)
[»] chr4 (2 HSPs)
chr4 (163-197)||(41162203-41162237)
chr4 (162-203)||(34621819-34621860)
[»] chr3 (1 HSPs)
chr3 (149-203)||(4534477-4534531)
[»] scaffold0024 (1 HSPs)
scaffold0024 (171-204)||(23805-23838)
[»] chr6 (1 HSPs)
chr6 (162-202)||(30865355-30865395)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 14959796 - 14959509
Alignment:
Q  18 atttccatacataagctcttaaagatagcttacgtaaatagcttatataaaaaatggtttttatcttacagctgttatagaaatacccgtatacataagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14959796 atttccatacataagctcttaaagatagcttacgtaaatagcttatataaaaaatggtttttatcttacagctgttatagaaatacccgtatacataagc 14959697  T
Q  118 ttgagttatcttataactgttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacaggttctaagtcatgt 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959696 ttgagttatcttataaccgttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacaggttctaagtcatgt 14959597  T
Q  218 ccaatgtttaacacttgaactttgaacattaaccttgacttttaaagaccagctcttctctatatttgtcaacatgatgtccatctca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14959596 ccaatgtttaacacttgaactttgaacattaaccttgacttttaaagaccagctcttctctatatttgtcaacatgattttcatctca 14959509  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 4855661 - 4855594
Alignment:
Q  135 tgttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaaca 202  Q
    ||||||| || || || |||| ||| |||||||| ||||||| |||||||||||||||||||| ||||    
T  4855661 tgttataaaaatagctaatacataagtacttatgctataagtatttaattaagttgtttatccaaaca 4855594  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 14257385 - 14257346
Alignment:
Q  163 cttatgttataagtgtttaattaagttgtttatcccaaca 202  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  14257385 cttatgttataagtgcttaattaagttgtttatccaaaca 14257346  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 30845239 - 30845200
Alignment:
Q  165 tatgttataagtgtttaattaagttgtttatcccaacagg 204  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  30845239 tatgttataagtgcttaattaagttgtttatccaaacagg 30845200  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 35135811 - 35135858
Alignment:
Q  162 acttatgttataagtgtttaattaagttgtttatcccaacaggttcta 209  Q
    ||||||| ||| |||||| |||||||||||||||||||||||| ||||    
T  35135811 acttatgctatgagtgttgaattaagttgtttatcccaacagggtcta 35135858  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 3501115 - 3501147
Alignment:
Q  163 cttatgttataagtgtttaattaagttgtttat 195  Q
    |||||||||||||||||||||||||||||||||    
T  3501115 cttatgttataagtgtttaattaagttgtttat 3501147  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 25507311 - 25507236
Alignment:
Q  138 tatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacaggttctaagtc 213  Q
    ||||||| || ||||||| |||| ||||||  || ||||| ||||||||||||||||||| |||||| || |||||    
T  25507311 tatagaaataacttatacataaacacttatcctaaaagtgcttaattaagttgtttatccaaacagggtcaaagtc 25507236  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 2221885 - 2221851
Alignment:
Q  163 cttatgttataagtgtttaattaagttgtttatcc 197  Q
    |||||| ||||||||||||||||||||||||||||    
T  2221885 cttatgctataagtgtttaattaagttgtttatcc 2221851  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 22388576 - 22388608
Alignment:
Q  165 tatgttataagtgtttaattaagttgtttatcc 197  Q
    ||||||||||| |||||||||||||||||||||    
T  22388576 tatgttataagcgtttaattaagttgtttatcc 22388608  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 21516292 - 21516252
Alignment:
Q  164 ttatgttataagtgtttaattaagttgtttatcccaacagg 204  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  21516292 ttatgttataagcgtttaattaagttgtttatccaaacagg 21516252  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 196
Target Start/End: Complemental strand, 24153195 - 24153164
Alignment:
Q  165 tatgttataagtgtttaattaagttgtttatc 196  Q
    ||||||||||||||||||||||||||||||||    
T  24153195 tatgttataagtgtttaattaagttgtttatc 24153164  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 23902213 - 23902245
Alignment:
Q  164 ttatgttataagtgtttaattaagttgtttatc 196  Q
    |||||||||||||| ||||||||||||||||||    
T  23902213 ttatgttataagtgattaattaagttgtttatc 23902245  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 35666981 - 35667013
Alignment:
Q  170 tataagtgtttaattaagttgtttatcccaaca 202  Q
    |||||||||||||||||||||||||||| ||||    
T  35666981 tataagtgtttaattaagttgtttatccaaaca 35667013  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 10150716 - 10150657
Alignment:
Q  137 ttatagaagtaccttatacgtaaatacttatgttataagtgtttaattaagttgtttatc 196  Q
    |||||||| || ||||||| |||| |||||| | ||||||| ||||||||||||||||||    
T  10150716 ttatagaaataacttatacataaacacttatataataagtgcttaattaagttgtttatc 10150657  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 33197390 - 33197429
Alignment:
Q  164 ttatgttataagtgtttaattaagttgtttatcccaacag 203  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  33197390 ttatgttataagtgtttaatttagttgtttatccaaacag 33197429  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 41162203 - 41162237
Alignment:
Q  163 cttatgttataagtgtttaattaagttgtttatcc 197  Q
    ||||||||||||||| |||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttatcc 41162237  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 34621860 - 34621819
Alignment:
Q  162 acttatgttataagtgtttaattaagttgtttatcccaacag 203  Q
    ||||||||| |||||||||| ||||||||||||||| |||||    
T  34621860 acttatgttgtaagtgtttagttaagttgtttatccaaacag 34621819  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 4534477 - 4534531
Alignment:
Q  149 cttatacgtaaatacttatgttataagtgtttaattaagttgtttatcccaacag 203  Q
    |||||||||||  ||||||  |||||||| ||||||||||||||||||| |||||    
T  4534477 cttatacgtaagcacttatactataagtgcttaattaagttgtttatccaaacag 4534531  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 23838 - 23805
Alignment:
Q  171 ataagtgtttaattaagttgtttatcccaacagg 204  Q
    ||||||||||||||||||||||||||| ||||||    
T  23838 ataagtgtttaattaagttgtttatccaaacagg 23805  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 30865395 - 30865355
Alignment:
Q  162 acttatgttataagtgtttaattaagttgtttatcccaaca 202  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  30865395 acttatgttataaatgcttaattaagttgtttatccaaaca 30865355  T

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