View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_38 (Length: 306)
Name: NF11133_low_38
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 25534936 - 25535222
Alignment:
| Q |
1 |
tcaatatccaagaaaaaaggcctagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaattttaccaagcttcaagcattcatcga |
100 |
Q |
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| T |
25534936 |
tcaatatccaagaaaaaaggcctagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaatcttaccaagcttcaagcattcatcga |
25535035 |
T |
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| Q |
101 |
ccatcaaaataaaagtgtcagagttgacagcatgaaaagtgggaggtgtatgatcgtctaacatgccatgaaacaagtcccaagcctcggnnnnnnnncc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
25535036 |
ccatcaaaataaaagtgtcagagttgacagcatgaaaagtgggaggtgtatgattgtctaacatgccatgaaacaagtcccaagcctcggttttttttcc |
25535135 |
T |
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| Q |
201 |
aaacctgaacaaaatctccaagagcatattgcaagttttaggtctcatcatacacttgcggttcaataaggagttataacactccat |
287 |
Q |
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| T |
25535136 |
aaacctgagcaaaatctccaagagcatattgcaagttttaggtctcatcatacacttgcggttcaataaggagttataacactccat |
25535222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 25526904 - 25527190
Alignment:
| Q |
1 |
tcaatatccaagaaaaaaggcctagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaattttaccaagcttcaagcattcatcga |
100 |
Q |
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|||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
25526904 |
tcaacatccaagaaaaaaggcttagaatcaggtttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccgagcttcaagcattcctcga |
25527003 |
T |
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| Q |
101 |
ccatcaaaataaaagtgtcagagttgacagcatgaaaagtgggaggtgtatgatcgtctaacatgccatgaaacaagtcccaagcctcggnnnnnnnncc |
200 |
Q |
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| T |
25527004 |
ccatcaaagtaaaagtgtcagagtcgacaccatgaaaagtggaaggcgtgtgattgtctaacatgtcatgaaacaagtcccaagcctcagttttctttcc |
25527103 |
T |
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| Q |
201 |
aaacctgaacaaaatctccaagagcatattgcaagttttaggtctcatcatacacttgcggttcaataaggagttataacactccat |
287 |
Q |
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| || ||| ||||| ||||||||| | || || ||||| |||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
25527104 |
atacttgagcaaaacctccaagagaacatcgccagtttcaggtctcatcctacacttgcggttcaataaagacttataacactccat |
25527190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 25515519 - 25515223
Alignment:
| Q |
1 |
tcaatatccaagaaaaaaggcctagaatcaggcttggttccaa-------ctttcttcaaagttgcaagggcttcatcaattttaccaagcttcaagcat |
93 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
25515519 |
tcaacatccaagaaaaaaggcttagaatcaggcttggttccaagttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcat |
25515420 |
T |
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| Q |
94 |
tcatcgaccatcaaaataaaagtgtcagagttgacagcatgaaaagtgggaggtgtatgatcgtctaacatgccatgaaacaagtcccaagcctcggnnn |
193 |
Q |
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|||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| | |
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| T |
25515419 |
tcattgaccatcacaataaaagtgttagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcccaagcctcagttt |
25515320 |
T |
|
| Q |
194 |
nnnnnccaaacctgaacaaaatctccaagagcatattgcaagttttaggtctcatca---tacacttgcggttcaataaggagttataacactccat |
287 |
Q |
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||| || || ||||| | |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25515319 |
tttttccagacgagagcaaaaccgtcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggagttataacactccat |
25515223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 25538156 - 25538215
Alignment:
| Q |
228 |
attgcaagttttaggtctcatcatacacttgcggttcaataaggagttataacactccat |
287 |
Q |
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||||||||||| |||||||||| || ||||| ||||||||||||||| |||| ||||||| |
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| T |
25538156 |
attgcaagtttcaggtctcatcctaaacttgtggttcaataaggagtcataagactccat |
25538215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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