View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_39 (Length: 301)
Name: NF11133_low_39
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 11821739 - 11821458
Alignment:
| Q |
19 |
cagaaatgcatcccactctaagcatgaagactgaagtagttttaatgctccactttatgcaaacttcagaactatagcacaaaaacacaaccagctccaa |
118 |
Q |
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| T |
11821739 |
cagaaatgcatcccactctaagcatgaagactgaagtagttttaatgctccactttatgcaaactatggaactatagcacaaaaacaccaccagctccaa |
11821640 |
T |
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| Q |
119 |
ggatatatattatcaacaagtaaggtacaacaaagccaaaacctagaataagaaaagctttgaaagaagatgataacaattataaacacattcaaagaaa |
218 |
Q |
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| T |
11821639 |
ggatatatattatcaacaagtaaggtacaacaaagccaaaacctagaataagaaaagctttgaaagaagatgataacaattataaacacattcaaagaaa |
11821540 |
T |
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| Q |
219 |
aactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctagtttgcctatacctttgctactcctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
11821539 |
aactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctagtttgcctatacttttacttctcctc |
11821458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 15273576 - 15273686
Alignment:
| Q |
176 |
ctttgaaagaagatgataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctag |
275 |
Q |
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| T |
15273576 |
ctttgaaagaagatggtaacaattacaaacacattcaaagaaaaactcaccaaaatatttgttccctcaattttctattcgctgttacttgtagctctat |
15273675 |
T |
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| Q |
276 |
tttgcctatac |
286 |
Q |
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| T |
15273676 |
tttgcctatac |
15273686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 44249874 - 44249734
Alignment:
| Q |
147 |
aacaaagccaaaacctagaataagaaaa-gctttgaaagaagatgataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctcca |
245 |
Q |
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||||||||||||| | |||||||||||| ||||||||| ||||||| |||| || ||| |||||||||||||| |||||||||||||||||||||| | |
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| T |
44249874 |
aacaaagccaaaaacgagaataagaaaacgctttgaaaaaagatgaccacaactacaaaaccattcaaagaaaaattcaccaaaacatttgtgccctcaa |
44249775 |
T |
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| Q |
246 |
ttttctattctttgctacctttagctctagtttgcctatac |
286 |
Q |
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|||||||||| | |||||||| |||||| |||| |||||| |
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| T |
44249774 |
ttttctattcactactacctttcgctctaatttgtctatac |
44249734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 44253425 - 44253344
Alignment:
| Q |
205 |
cacattcaaagaaaaactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctagtttgcctatac |
286 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| || |||||||| |||||||| |||||||| |||| |||||| |
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| T |
44253425 |
cacattcaaagaaaaactcaccaaaacatttttgcactcaatcttctattcactgctacctatagctctaatttgtctatac |
44253344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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