View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11133_low_4 (Length: 661)
Name: NF11133_low_4
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 26783891 - 26784533
Alignment:
| Q |
1 |
ttcaatagaattggatttgggattgtaatcaattttaagaccaaacatagtttgaccaacccaacctgtagaacctaacaaagattgagacaaatggaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26783891 |
ttcaatagaattggatttgggattgtaatcaattttaagaccaaacatagtttgaccaacccaacctgtagaacctaacaaagattgagacaaatggaag |
26783990 |
T |
|
| Q |
101 |
agatgaaaagttaagtaaaaaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26783991 |
agatgaaaagttaagtaaaaaagaccttggtgctgcaaccgcgtttaggagggtgatgatggtagggatataaacagttccccatttagggaccacaatc |
26784090 |
T |
|
| Q |
201 |
tcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26784091 |
tcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtgaaccacaatcttccggacaaagaaaaaactgtaaaccatat |
26784190 |
T |
|
| Q |
301 |
atgttttcttccacaaagacactttctgccatagacaaattaaattagcagatgaatgaatatttataccataatttaaattgtaattagctagtgtatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||| |
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| T |
26784191 |
atgttttcttccacaaagacactttctgccatagacaaattaaattagcagatgaatgaatatttttatcataatttaaattgtaagtaggtagtgtatt |
26784290 |
T |
|
| Q |
401 |
catcaagggaccaaccaatttaccttgtttgtgagaatctccataatcgttttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatc |
500 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26784291 |
catcaagagaccaaccaa-ttaccttgtttgtgagaatctccataatcattttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatc |
26784389 |
T |
|
| Q |
501 |
tataggcatttaaagtactaggcaattcatttttaacctatagacaaattcataccatatagcaagaaaaccatctatgttaaaatgagaccaatgtaat |
600 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26784390 |
tataggcatttaaagtactgggcaattcatttttaacctatagacaaattcataccatatagcaagagaaccatctatgttaaaatgagaccaatgtaat |
26784489 |
T |
|
| Q |
601 |
gtaacactcttgtcacattaaaatttggtaaaataccaggtaaa |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26784490 |
ttaacactcttgtcacattaaaatttggtaaaataccaggtaaa |
26784533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 105 - 544
Target Start/End: Original strand, 26817072 - 26817509
Alignment:
| Q |
105 |
gaaaagttaagtaaa-aaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatctca |
203 |
Q |
| |
|
|||||||| |||||| ||||||||||||| | |||| || ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26817072 |
gaaaagttgagtaaataaagaccttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctca |
26817171 |
T |
|
| Q |
204 |
ggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatatatg |
303 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||||||||||||| |||||| ||||||||||| | |||||||||||| || |||| |||||| |
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| T |
26817172 |
ggcaccataacagttgcaggtaacagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatata |
26817271 |
T |
|
| Q |
304 |
ttttcttccacaaagacactttctgccatagacaaattaaattagcagatgaatgaatatttataccataatttaaattgtaattagctagtgtattcat |
403 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| || | ||| |||| ||||| | ||||| ||||||| |||| |||||| ||||| |
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|
| T |
26817272 |
acttcttccacaaagacactttctgcaatagacatattaaacaaggacatgcatga--atttagatcataagttaaattataatcgactagtgaattcaa |
26817369 |
T |
|
| Q |
404 |
caagggaccaaccaatttaccttgtttgtgagaatctccataatcgttttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctat |
503 |
Q |
| |
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||| ||| || | |||||||| || | |||||||||||| | |||| || || |||||||| || |||||||||||||||||||||||||| |||| |
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|
| T |
26817370 |
caa-ggattaaaataattaccttgcttctaagaatctccatagccatttttctaaagagattggctggcccacatgaccatcgatgttgttggtacctat |
26817468 |
T |
|
| Q |
504 |
aggcatttaaagtactaggcaattcatttttaacctataga |
544 |
Q |
| |
|
| || || || ||||| |||||||||||||||||||||||| |
|
|
| T |
26817469 |
aagccttaaatgtacttggcaattcatttttaacctataga |
26817509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 85 - 542
Target Start/End: Original strand, 26790342 - 26790801
Alignment:
| Q |
85 |
ttgagacaaatggaagagatgaaaagttaagtaaa-aaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttcccc |
183 |
Q |
| |
|
||||| ||||| || || |||||||||| |||||| ||||||||||||| | |||| || || || |||||||| |||||||||| |||||||||||||| |
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|
| T |
26790342 |
ttgaggcaaatagatgaaatgaaaagttgagtaaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttcccc |
26790441 |
T |
|
| Q |
184 |
atttagggaccacaatctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaa |
283 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||| || | |||||| |
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|
| T |
26790442 |
atttagggaccacaacctcaggaaccataacagttgcaggtaacaatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaa |
26790541 |
T |
|
| Q |
284 |
aaaactgtaaaccatatatgttttcttccacaaagacactttctgccatagacaaattaaattagcagatgaatgaatatttataccataatttaaattg |
383 |
Q |
| |
|
|||||||||||| |||| | |||||| ||||||||||||||||| || | |||||||| |||| || |||| ||| ||| |||| ||| ||| |
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|
| T |
26790542 |
aaaactgtaaacaatatgtagcttcttcaacaaagacactttctgcaatggtaaaattaaacaagcacattgatga--attcatataataaattatatta |
26790639 |
T |
|
| Q |
384 |
taattagctagtgtattcatcaagggaccaacc---aatttaccttgtttgtgagaatctccataatcgttttcctgaaaagattggccggtccacatga |
480 |
Q |
| |
|
||||| || | | ||||||| || ||| ||||| ||||||||| |||||| ||||||||||| |||| ||||||||||| || || |||||||| |
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|
| T |
26790640 |
taattggccaatatattcattaaaggatcaaccttgtttttaccttgcttgtgacaatctccataacaatttttctgaaaagatttgctggcccacatga |
26790739 |
T |
|
| Q |
481 |
ccatcgatgttgttggtatctataggcatttaaagtactaggcaattcatttttaacctata |
542 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||| |
|
|
| T |
26790740 |
ccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacctata |
26790801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 117 - 329
Target Start/End: Original strand, 26830728 - 26830940
Alignment:
| Q |
117 |
aaaaaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatctcaggcaccataacag |
216 |
Q |
| |
|
|||||| ||||||| | | |||| || |||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |
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|
| T |
26830728 |
aaaaaataccttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacag |
26830827 |
T |
|
| Q |
217 |
ttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaa |
316 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
26830828 |
ttgcaggtaacacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaacaacatatatcttcttccacaa |
26830927 |
T |
|
| Q |
317 |
agacactttctgc |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26830928 |
agacactttctgc |
26830940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 420 - 560
Target Start/End: Original strand, 26831030 - 26831170
Alignment:
| Q |
420 |
ttaccttgtttgtgagaatctccataatcgttttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtact |
519 |
Q |
| |
|
||||||||||||||| ||||||||| | | |||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||| ||||| |
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|
| T |
26831030 |
ttaccttgtttgtgacaatctccattaccatttttctgaaaagattggctggtccacatgaccatcgatgttgttggtacctaaaggcttttaatgtact |
26831129 |
T |
|
| Q |
520 |
aggcaattcatttttaacctatagacaaattcataccatat |
560 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
26831130 |
tggcaattcgtttttaacctatagaccaattcacaccatat |
26831170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 153 - 329
Target Start/End: Complemental strand, 41920554 - 41920378
Alignment:
| Q |
153 |
gtgataatggaagggatataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgt |
252 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||| ||||| ||| ||||| |||| ||| |||||||||| ||||||||||| |||||||| || | |
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|
| T |
41920554 |
gtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaacgtat |
41920455 |
T |
|
| Q |
253 |
ttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaaagacactttctgc |
329 |
Q |
| |
|
| ||||| | | | ||||| |||||||| |||||||||| | || | | ||||||||||| |||||||||||| |
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|
| T |
41920454 |
tgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttctgc |
41920378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 539
Target Start/End: Complemental strand, 41920303 - 41920184
Alignment:
| Q |
420 |
ttaccttgtttgtgagaatctccataatcgttttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtact |
519 |
Q |
| |
|
||||||||||| | | |||||||| | | |||| | |||||||||||| |||||||| ||||| ||||| |||||||| | ||||| || |||||||| |
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|
| T |
41920303 |
ttaccttgtttctaataatctccaagaccatttttcggaaaagattggctggtccacaagaccaacgatgctgttggtaacggtaggccttgaaagtact |
41920204 |
T |
|
| Q |
520 |
aggcaattcatttttaacct |
539 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
41920203 |
cggcagttcatttttaacct |
41920184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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