View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11133_low_46 (Length: 259)
Name: NF11133_low_46
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 9087314 - 9087554
Alignment:
| Q |
17 |
gattggacctgaattggaagagagcacaatcatagttctcttatttttagtacaatataagcaaaactcaggataaacacattgatcttgtgatgattcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9087314 |
gattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactcaggataaacacattgatcttgtgatgattcc |
9087413 |
T |
|
| Q |
117 |
ttaaggagttggaatgggaatcgaataatcggctcgttaggtccacaggacaattctgtccactcgtcatgatagctgctgctattgataagctggagat |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9087414 |
ttaacgagttggaatgggaatcgaataatcggctcgttaggtccacaggacaattctgtccactcgtcatgatagctgctgctattgataagctggagat |
9087513 |
T |
|
| Q |
217 |
tcagaagaatcagtagcataatcaaggtagtctgtgctcct |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9087514 |
tcagaagaatcagtagcataatcaaggtagtatgtgctcct |
9087554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 66 - 257
Target Start/End: Original strand, 9126497 - 9126688
Alignment:
| Q |
66 |
gtacaatataagcaaaactcaggataaacacattgatcttgtgatgattccttaaggagttggaatgggaatcgaataatcggctcgttaggtccacagg |
165 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
9126497 |
gtacaatacaggcaaaactcaggataaacacattgatcttgtgatgattccttaacgagttggaatgggcatcgaataaccggctcgttagttccacagg |
9126596 |
T |
|
| Q |
166 |
acaattctgtccactcgtcatgatagctgctgctattgataagctggagattcagaagaatcagtagcataatcaaggtagtctgtgctcct |
257 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
9126597 |
acaattctgtcgactcgtcatgatagctgctgctattgaaaagctggagattcagaagaatcgatagtataatcatcgtagtatgtgctcct |
9126688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 8866739 - 8866930
Alignment:
| Q |
20 |
tggacctgaattggaagagagcacaatcatagttctcttatttttagtacaatataagcaaaactcaggataaacacattgatcttgtgatgattcctta |
119 |
Q |
| |
|
|||||||||| ||| ||| | ||| ||||| || |||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
8866739 |
tggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactcaggataaacacattcatgttgtgatgattcctta |
8866838 |
T |
|
| Q |
120 |
aggagttggaatgggaatcgaataatcggctcgttaggtccacaggacaattctgtccactcgtcatgatagctgctgctattgataagctg |
211 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||| ||||||||| ||||||||| | ||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
8866839 |
acaagttggaaggggaatcgaataatcggttcgtaaggtccacatgacaattctctgcactcttcatgactgctgctgttattgataagctg |
8866930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 8862870 - 8862996
Alignment:
| Q |
17 |
gattggacctgaattggaagagagcacaatcatagttctcttatttttagtacaatataagcaaaactcaggataaacacattgatcttgtgatgattcc |
116 |
Q |
| |
|
||||||||||||| ||| |||||| || ||||| ||| ||| |||| ||||||||||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
8862870 |
gattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactcaggatgagtacattgatcttgtgatgattcc |
8862969 |
T |
|
| Q |
117 |
ttaaggagttggaatgggaatcgaata |
143 |
Q |
| |
|
| || |||||||| |||||||||||| |
|
|
| T |
8862970 |
tcaactagttggaaggggaatcgaata |
8862996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 9071008 - 9071157
Alignment:
| Q |
17 |
gattggacctgaattggaagagagcacaatcatagttctcttatttttagtacaatataagcaaaactc---aggataaacacattgatcttgtgatgat |
113 |
Q |
| |
|
||||||||||||| || |||||| || ||||| ||| ||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
9071008 |
gattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgatcttgtgatgat |
9071107 |
T |
|
| Q |
114 |
tccttaaggagttggaatgggaatcgaataatcggctcgttaggtccaca |
163 |
Q |
| |
|
||||||| || |||||| || ||| ||||| || | |||||||||||| |
|
|
| T |
9071108 |
tccttaacgatttggaagggaaatttaataagaggttggttaggtccaca |
9071157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University