View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_47 (Length: 252)
Name: NF11133_low_47
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24693913 - 24694157
Alignment:
| Q |
1 |
acctagagatttaatggt-----atagtttctccttcagtaccaaaccatcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatg |
95 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
24693913 |
acctagagatttaatggttggtaatagtttctccttcagtaccaaaccatcattaaatgataaaccaaatatatactttgtgaaagcattgaagtcaatg |
24694012 |
T |
|
| Q |
96 |
ggtgatatttattttactgatggtaagacctcacttcagttaagttcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactg |
195 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24694013 |
ggtgataaatattttactgatggtaagacctcacttcagttaagttcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactc |
24694112 |
T |
|
| Q |
196 |
ctagttgtaattatcttctaagacccgttattcctattggaccta |
240 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||| |||||||||| |
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| T |
24694113 |
ctaggtgtaatcatctactaagacccgttattcccattggaccta |
24694157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 24479157 - 24478939
Alignment:
| Q |
19 |
atagtttctccttcagtaccaaaccatcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgatatttattttactgatgg |
118 |
Q |
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||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||| || |||| | ||| |
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| T |
24479157 |
atagtttctccttaccaaccaaatcatcattaaaagataaaccaaaaatagactttgtaaaagcattgaagtcagtggatgatagagatcttaccggtgg |
24479058 |
T |
|
| Q |
119 |
taagacctcacttcagttaagttcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactgctagttgtaattatcttctaaga |
218 |
Q |
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|||||||||||||| |||||| |||||||||| ||||||||||||||||| | ||| || ||||||||||||||||||| |||||| || ||| |||| |
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| T |
24479057 |
taagacctcacttccgttaagctcaactgagg---aagacatggaacttgttcgatcattcgacaattttttaactgctagatgtaatcatattccaaga |
24478961 |
T |
|
| Q |
219 |
cccgttattcctattggaccta |
240 |
Q |
| |
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|| ||||||| |||||||||| |
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| T |
24478960 |
cctattattcccattggaccta |
24478939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 41369667 - 41369449
Alignment:
| Q |
19 |
atagtttctccttcagtaccaaaccatcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgatatttattttactgatgg |
118 |
Q |
| |
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|||||||||||| | |||| |||||||||||||||||||| |||||| ||||||||| ||||||| || | ||||| ||||| || |||| |||| |
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| T |
41369667 |
atagtttctcctcaggcaccataccatcattaaatgataaacaaaaaattgactttgtggaagcattaaacttaatggatgatagagatcttaccaatgg |
41369568 |
T |
|
| Q |
119 |
taagacctcacttcagttaagttcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactgctagttgtaattatcttctaaga |
218 |
Q |
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| | |||||||||| ||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||| |||| || |||| |||||| |||| |
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| T |
41369567 |
tgaaacctcacttccgttaagttcaactgaggaaga---catggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaaga |
41369471 |
T |
|
| Q |
219 |
cccgttattcctattggaccta |
240 |
Q |
| |
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|| ||||||| |||||||||| |
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| T |
41369470 |
ccaattattcccattggaccta |
41369449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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