View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_low_50 (Length: 246)

Name: NF11133_low_50
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_low_50
NF11133_low_50
[»] chr5 (36 HSPs)
chr5 (1-228)||(40433877-40434099)
chr5 (116-236)||(15061760-15061880)
chr5 (184-228)||(33750986-33751030)
chr5 (133-236)||(11956157-11956260)
chr5 (133-236)||(41064162-41064265)
chr5 (116-234)||(15615103-15615221)
chr5 (187-228)||(37274817-37274858)
chr5 (116-228)||(11438339-11438451)
chr5 (184-236)||(15060232-15060284)
chr5 (184-236)||(15616436-15616488)
chr5 (184-236)||(30798515-30798567)
chr5 (184-228)||(33847179-33847223)
chr5 (133-236)||(11957585-11957688)
chr5 (133-236)||(41065593-41065696)
chr5 (116-228)||(21776851-21776964)
chr5 (117-162)||(40434474-40434519)
chr5 (184-228)||(4061454-4061498)
chr5 (184-228)||(21775530-21775574)
chr5 (184-236)||(30796647-30796699)
chr5 (116-171)||(9751678-9751733)
chr5 (185-232)||(10011683-10011730)
chr5 (118-171)||(5700665-5700718)
chr5 (184-225)||(29521377-29521418)
chr5 (188-228)||(8367943-8367983)
chr5 (184-228)||(10012752-10012796)
chr5 (184-228)||(29520203-29520247)
chr5 (116-167)||(15396476-15396527)
chr5 (117-171)||(13948584-13948638)
chr5 (117-171)||(28819537-28819591)
chr5 (128-162)||(33847748-33847782)
chr5 (184-214)||(39419643-39419673)
chr5 (129-162)||(5984004-5984037)
chr5 (116-171)||(9750447-9750503)
chr5 (118-162)||(11465891-11465935)
chr5 (116-171)||(35599312-35599368)
chr5 (184-228)||(40434544-40434588)
[»] chr6 (22 HSPs)
chr6 (116-228)||(56057-56169)
chr6 (184-236)||(24234398-24234450)
chr6 (188-228)||(33485020-33485060)
chr6 (133-236)||(22058215-22058318)
chr6 (133-228)||(24914456-24914551)
chr6 (186-228)||(6000615-6000657)
chr6 (133-228)||(12322748-12322842)
chr6 (135-233)||(22056502-22056600)
chr6 (116-236)||(24235567-24235688)
chr6 (184-217)||(6759073-6759106)
chr6 (184-228)||(54874-54918)
chr6 (188-228)||(11424830-11424870)
chr6 (116-171)||(3119320-3119375)
chr6 (116-171)||(28583547-28583602)
chr6 (199-233)||(5999793-5999827)
chr6 (116-162)||(6000682-6000728)
chr6 (185-227)||(12321632-12321674)
chr6 (184-218)||(21939189-21939223)
chr6 (184-214)||(22253235-22253265)
chr6 (116-170)||(32614172-32614226)
chr6 (116-148)||(9234815-9234847)
chr6 (116-156)||(11425785-11425825)
[»] chr8 (34 HSPs)
chr8 (129-236)||(27164595-27164702)
chr8 (133-236)||(27163134-27163237)
chr8 (133-236)||(39810023-39810126)
chr8 (184-228)||(6105624-6105668)
chr8 (134-236)||(39808666-39808768)
chr8 (184-228)||(1601198-1601242)
chr8 (184-228)||(3252231-3252275)
chr8 (184-236)||(5704467-5704519)
chr8 (133-217)||(9768260-9768344)
chr8 (184-228)||(28574607-28574651)
chr8 (184-223)||(28561969-28562008)
chr8 (184-223)||(28567467-28567506)
chr8 (184-227)||(39913880-39913923)
chr8 (117-171)||(34901503-34901557)
chr8 (184-226)||(42350124-42350166)
chr8 (184-228)||(1600143-1600187)
chr8 (184-228)||(1602843-1602887)
chr8 (184-228)||(5703121-5703165)
chr8 (117-157)||(28561435-28561475)
chr8 (117-157)||(28566933-28566973)
chr8 (116-162)||(1601673-1601720)
chr8 (116-171)||(39513867-39513922)
chr8 (129-171)||(19158169-19158211)
chr8 (184-214)||(24359032-24359062)
chr8 (184-226)||(28575059-28575101)
chr8 (184-217)||(21397838-21397871)
chr8 (184-217)||(21792331-21792364)
chr8 (184-217)||(24359675-24359708)
chr8 (184-225)||(28561502-28561543)
chr8 (184-225)||(28567000-28567041)
chr8 (188-228)||(1601743-1601783)
chr8 (135-171)||(8304179-8304215)
chr8 (116-156)||(40702027-40702067)
chr8 (188-228)||(42349033-42349073)
[»] chr3 (36 HSPs)
chr3 (129-236)||(10615288-10615395)
chr3 (184-239)||(22257268-22257323)
chr3 (116-236)||(46610009-46610129)
chr3 (116-227)||(46596095-46596206)
chr3 (116-228)||(15093658-15093771)
chr3 (116-228)||(28208090-28208202)
chr3 (184-236)||(10616708-10616760)
chr3 (185-236)||(48288298-48288349)
chr3 (184-226)||(2011124-2011166)
chr3 (116-162)||(12210028-12210074)
chr3 (116-228)||(18704953-18705066)
chr3 (184-225)||(37976037-37976078)
chr3 (184-228)||(27315262-27315306)
chr3 (184-228)||(43930745-43930789)
chr3 (116-228)||(46597453-46597565)
chr3 (134-217)||(14824769-14824852)
chr3 (133-228)||(15086240-15086335)
chr3 (116-171)||(41749386-41749441)
chr3 (116-162)||(12066229-12066275)
chr3 (184-218)||(14826030-14826064)
chr3 (184-226)||(14995979-14996021)
chr3 (184-228)||(2011905-2011949)
chr3 (184-228)||(22256271-22256315)
chr3 (184-228)||(37977454-37977498)
chr3 (184-220)||(38842186-38842222)
chr3 (184-215)||(12071583-12071614)
chr3 (116-171)||(18142199-18142254)
chr3 (197-236)||(28207059-28207098)
chr3 (116-171)||(54566512-54566566)
chr3 (184-218)||(3190583-3190617)
chr3 (116-162)||(18140940-18140986)
chr3 (116-162)||(46207113-46207159)
chr3 (184-218)||(51116279-51116313)
chr3 (186-223)||(27318151-27318188)
chr3 (184-228)||(23539332-23539376)
chr3 (184-228)||(23545470-23545514)
[»] chr1 (40 HSPs)
chr1 (116-228)||(8930292-8930403)
chr1 (116-236)||(13917208-13917327)
chr1 (133-234)||(52084764-52084865)
chr1 (184-239)||(44311275-44311330)
chr1 (184-228)||(5560940-5560984)
chr1 (184-236)||(9441636-9441688)
chr1 (184-236)||(9442926-9442978)
chr1 (116-236)||(14625370-14625490)
chr1 (184-235)||(14626716-14626767)
chr1 (184-227)||(37194435-37194478)
chr1 (184-226)||(13916159-13916201)
chr1 (184-225)||(30536435-30536476)
chr1 (184-228)||(37193546-37193590)
chr1 (184-228)||(37269605-37269649)
chr1 (184-227)||(4487608-4487651)
chr1 (184-227)||(23321332-23321375)
chr1 (184-226)||(23322556-23322598)
chr1 (116-162)||(38742392-38742438)
chr1 (184-224)||(2273568-2273608)
chr1 (184-228)||(6077008-6077052)
chr1 (184-239)||(27548892-27548948)
chr1 (184-228)||(30537457-30537501)
chr1 (116-171)||(31648075-31648131)
chr1 (184-228)||(37268891-37268935)
chr1 (184-228)||(38741543-38741587)
chr1 (116-171)||(8928815-8928870)
chr1 (117-171)||(16786150-16786205)
chr1 (116-162)||(47145146-47145193)
chr1 (116-171)||(49201387-49201442)
chr1 (186-228)||(2274607-2274649)
chr1 (116-162)||(13903382-13903428)
chr1 (116-162)||(24545457-24545503)
chr1 (116-162)||(24963014-24963060)
chr1 (117-171)||(31648588-31648642)
chr1 (116-162)||(33645014-33645060)
chr1 (116-162)||(43635835-43635881)
chr1 (116-162)||(44311208-44311254)
chr1 (116-161)||(40246277-40246322)
chr1 (116-171)||(8984853-8984909)
chr1 (184-228)||(43635901-43635945)
[»] chr4 (37 HSPs)
chr4 (129-228)||(21994340-21994437)
chr4 (116-236)||(20962194-20962314)
chr4 (116-236)||(29248242-29248362)
chr4 (184-228)||(43537519-43537563)
chr4 (133-236)||(34739906-34740009)
chr4 (133-236)||(34741330-34741433)
chr4 (184-227)||(51754144-51754187)
chr4 (184-236)||(29249646-29249698)
chr4 (184-239)||(54555283-54555338)
chr4 (184-234)||(43537776-43537826)
chr4 (184-234)||(50879976-50880026)
chr4 (129-227)||(51752696-51752794)
chr4 (116-236)||(12566875-12566996)
chr4 (184-224)||(2438320-2438360)
chr4 (184-236)||(20963636-20963688)
chr4 (184-226)||(37421848-37421890)
chr4 (184-226)||(46426169-46426211)
chr4 (184-222)||(49629701-49629739)
chr4 (184-228)||(9410225-9410269)
chr4 (116-171)||(9410284-9410340)
chr4 (187-223)||(37600875-37600911)
chr4 (188-228)||(40479461-40479501)
chr4 (184-228)||(55499319-55499363)
chr4 (116-171)||(34027196-34027251)
chr4 (189-236)||(46427183-46427230)
chr4 (184-227)||(50881369-50881412)
chr4 (116-171)||(51754202-51754257)
chr4 (116-171)||(54554383-54554438)
chr4 (116-162)||(14183611-14183657)
chr4 (184-226)||(15694529-15694571)
chr4 (184-218)||(52264512-52264546)
chr4 (116-169)||(49629635-49629687)
chr4 (192-228)||(9410076-9410112)
chr4 (118-162)||(12352470-12352514)
chr4 (184-228)||(15695121-15695165)
chr4 (184-224)||(49630546-49630586)
chr4 (184-228)||(55500349-55500393)
[»] scaffold0250 (2 HSPs)
scaffold0250 (184-228)||(11513-11557)
scaffold0250 (116-228)||(10080-10192)
[»] scaffold0129 (2 HSPs)
scaffold0129 (184-228)||(37336-37380)
scaffold0129 (184-230)||(30793-30839)
[»] chr2 (41 HSPs)
chr2 (184-236)||(21903993-21904045)
chr2 (184-236)||(38876058-38876110)
chr2 (184-236)||(38876958-38877010)
chr2 (116-236)||(38937445-38937565)
chr2 (133-236)||(1902948-1903051)
chr2 (133-236)||(1904345-1904448)
chr2 (184-235)||(18416611-18416662)
chr2 (184-239)||(22293478-22293533)
chr2 (184-227)||(36565304-36565347)
chr2 (133-234)||(7577715-7577816)
chr2 (184-236)||(38815030-38815082)
chr2 (184-236)||(38936012-38936064)
chr2 (184-236)||(38936998-38937050)
chr2 (129-228)||(16670512-16670611)
chr2 (184-239)||(41307081-41307136)
chr2 (133-227)||(7576343-7576437)
chr2 (135-233)||(44366887-44366985)
chr2 (184-228)||(10355076-10355120)
chr2 (116-171)||(15747751-15747806)
chr2 (184-239)||(39151251-39151306)
chr2 (184-233)||(11101163-11101211)
chr2 (192-237)||(28756488-28756533)
chr2 (184-228)||(5969797-5969841)
chr2 (192-228)||(10355265-10355301)
chr2 (184-228)||(18249699-18249743)
chr2 (184-228)||(23834649-23834693)
chr2 (184-228)||(38813644-38813688)
chr2 (184-228)||(41305950-41305994)
chr2 (184-228)||(44368329-44368373)
chr2 (184-223)||(11102115-11102154)
chr2 (185-228)||(16671748-16671791)
chr2 (184-223)||(18250839-18250878)
chr2 (116-162)||(19686190-19686236)
chr2 (184-217)||(8238055-8238088)
chr2 (117-162)||(34404601-34404646)
chr2 (117-162)||(39227090-39227135)
chr2 (184-228)||(5970701-5970745)
chr2 (184-228)||(12301070-12301114)
chr2 (184-228)||(22292547-22292591)
chr2 (116-156)||(23835789-23835829)
chr2 (119-163)||(28141691-28141735)
[»] scaffold0093 (1 HSPs)
scaffold0093 (184-225)||(8995-9036)
[»] scaffold0227 (1 HSPs)
scaffold0227 (188-228)||(24882-24922)
[»] scaffold0040 (2 HSPs)
scaffold0040 (184-228)||(64571-64615)
scaffold0040 (184-228)||(65987-66031)
[»] chr7 (29 HSPs)
chr7 (116-228)||(1831925-1832036)
chr7 (184-236)||(17763405-17763457)
chr7 (184-236)||(17764636-17764688)
chr7 (184-228)||(24436330-24436374)
chr7 (184-236)||(48170198-48170250)
chr7 (116-228)||(9554204-9554317)
chr7 (184-225)||(47638765-47638806)
chr7 (184-236)||(1830880-1830932)
chr7 (184-228)||(9553469-9553513)
chr7 (184-228)||(34158126-34158170)
chr7 (184-228)||(35891075-35891119)
chr7 (184-227)||(8175913-8175956)
chr7 (116-171)||(23806229-23806283)
chr7 (186-228)||(11056803-11056845)
chr7 (116-162)||(33757410-33757456)
chr7 (184-233)||(13772580-13772629)
chr7 (116-171)||(20164425-20164480)
chr7 (116-171)||(42509040-42509095)
chr7 (116-162)||(9553400-9553446)
chr7 (194-228)||(47637794-47637828)
chr7 (116-157)||(35891010-35891051)
chr7 (116-171)||(5219038-5219094)
chr7 (184-228)||(8174953-8174997)
chr7 (184-228)||(11058117-11058161)
chr7 (194-222)||(22718512-22718540)
chr7 (184-228)||(25274728-25274772)
chr7 (184-228)||(25776450-25776494)
chr7 (184-228)||(33767334-33767378)
chr7 (184-228)||(37413787-37413831)
[»] scaffold0176 (1 HSPs)
scaffold0176 (184-239)||(220-275)
[»] scaffold0210 (3 HSPs)
scaffold0210 (184-227)||(4776-4819)
scaffold0210 (185-228)||(5837-5880)
scaffold0210 (194-228)||(16697-16731)
[»] scaffold0933 (2 HSPs)
scaffold0933 (116-157)||(2734-2775)
scaffold0933 (193-223)||(2667-2697)
[»] scaffold0246 (2 HSPs)
scaffold0246 (188-228)||(17400-17440)
scaffold0246 (188-228)||(15947-15987)
[»] scaffold0112 (1 HSPs)
scaffold0112 (192-228)||(36138-36174)
[»] scaffold0228 (3 HSPs)
scaffold0228 (186-228)||(8153-8195)
scaffold0228 (186-228)||(15735-15777)
scaffold0228 (186-228)||(25687-25729)
[»] scaffold0027 (1 HSPs)
scaffold0027 (134-171)||(51450-51487)
[»] scaffold0291 (1 HSPs)
scaffold0291 (184-228)||(20908-20952)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 40433877 - 40434099
Alignment:
Q  1 caaacagaatacttctgagcatcaatgaagtcagtgatgatggtgatactctgtgaacagaagatctaaattttcattagctgtttaactttacacaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40433877 caaacagaatacttctgagcatcaatgaagtcagtgatgatggtgatactctgtgaacagaagatctaaattttcattagctgtttaacttcacacaaat 40433976  T
Q  101 gtatannnnnnnnnngggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgt 200  Q
    |||||          || |||||||||||||||| |||||||||||||||||||||||||||  |||||||            |||||||||||||||||    
T  40433977 gtata-ttttttttcggattaatagacttttacctcctgtaatatagggcacttttgatttt-gcccctgt---aaaaaaaaattagattccgtccttgt 40434071  T
Q  201 aaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||||||    
T  40434072 aaaataaagattcttcaggattgccccc 40434099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 15061880 - 15061760
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| |||||||||    
T  15061880 gggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgtaaaaaaataaatttagattccgtccttgtaaaatgaagattctt 15061781  T
Q  216 caggattgccccccgagccct 236  Q
    || |||||||||| |||||||    
T  15061780 caagattgccccctgagccct 15061760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33750986 - 33751030
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33750986 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 33751030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 11956157 - 11956260
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  11956157 ccccctgtaatatagggcacttttggttttggcccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 11956256  T
Q  233 ccct 236  Q
    ||||    
T  11956257 ccct 11956260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 41064162 - 41064265
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  41064162 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 41064261  T
Q  233 ccct 236  Q
    ||||    
T  41064262 ccct 41064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 15615103 - 15615221
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||| |||| ||||| ||            |||||||||||||||||||| | |||||||||    
T  15615103 gggttaataggtctttaccccctgtaatatagggcacttttggttttgtccccggtaaaattttttttttagattccgtccttgtaaattgaagattctt 15615202  T
Q  216 caggattgccccccgagcc 234  Q
    || |||||||||| |||||    
T  15615203 caagattgccccctgagcc 15615221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 37274817 - 37274858
Alignment:
Q  187 gattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37274817 gattccgtccttgtaaaataaagattcttcaggattgccccc 37274858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 11438339 - 11438451
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    |||||||||||  ||||||||||||||||||||| ||||||| ||||   ||||||            ||||||||||||| ||||||||||||||||||    
T  11438339 gggttaatagagctttaccccctgtaatatagggtacttttggttttgctccctgtaaatttttttttttagattccgtccatgtaaaataaagattctt 11438438  T
Q  216 caggattgccccc 228  Q
    |||||||| ||||    
T  11438439 caggattgtcccc 11438451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 15060232 - 15060284
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  15060232 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 15060284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 15616488 - 15616436
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  15616488 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 15616436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 30798567 - 30798515
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  30798567 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 30798515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33847179 - 33847223
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  33847179 ttagattctgtccttgtaaaataaagattcttcaggattgccccc 33847223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 11957688 - 11957585
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| | ||||||||| |||||||||| |||    
T  11957688 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgacgattcttcaagattgccccctgag 11957589  T
Q  233 ccct 236  Q
    ||||    
T  11957588 ccct 11957585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 41065696 - 41065593
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            ||||||||| |||||||||||| ||||||||||| |||||||||| |||    
T  41065696 ccccctgtaatatagggcacttttggttttggcccctgtaaaattttttttttagattccttccttgtaaaatgaagattcttcaagattgccccctgag 41065597  T
Q  233 ccct 236  Q
    ||||    
T  41065596 ccct 41065593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 21776964 - 21776851
Alignment:
Q  116 gggttaatagacttttacccc-ctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattct 214  Q
    ||||||||||   |||||||| ||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||    
T  21776964 gggttaataggtctttacccctctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattct 21776865  T
Q  215 tcaggattgccccc 228  Q
    ||| ||||||||||    
T  21776864 tcaagattgccccc 21776851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 40434474 - 40434519
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  40434474 ggttaatagacttttaccccctgtattatatggcacttttgatttt 40434519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 4061498 - 4061454
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  4061498 ttagatttcgtccttgtaaaataaagattcttcaggattgtcccc 4061454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 21775530 - 21775574
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  21775530 ttagattccgtccttgtaaaatgaagattcttcaagattgccccc 21775574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 30796647 - 30796699
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| |||||||    
T  30796647 ttagattccgtccttgtaaaatgaagattcttcaagattgcaccctgagccct 30796699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 9751733 - 9751678
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||  |||||||    
T  9751733 gggttaataggcttttaccccctgtaatataggtcacttttggttttgccccctgt 9751678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 10011683 - 10011730
Alignment:
Q  185 tagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  10011683 tagattccgtccttataaaataaagattcttcacgattgcccctcgag 10011730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 5700718 - 5700665
Alignment:
Q  118 gttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||  |||||||    
T  5700718 gttaatagacctttaccccctgcaatataggtcacttttgattttcccccctgt 5700665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 29521418 - 29521377
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  29521418 ttagattccgtccttgtaaaatgaagattcttcacgattgcc 29521377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 8367983 - 8367943
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  8367983 attccgtccttgtaaaatgaagattcttcacgattgccccc 8367943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 10012796 - 10012752
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  10012796 ttagatttcgtccttgtaaaatgaagattcttcacgattgccccc 10012752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 29520203 - 29520247
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||    
T  29520203 ttagattccgtctttgtaaaatgaagattcttcacgattgccccc 29520247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 15396527 - 15396476
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatccc 167  Q
    |||||||||| |||||||||||||||||||| | ||||| ||||||| ||||    
T  15396527 gggttaataggcttttaccccctgtaatatatgtcacttctgattttttccc 15396476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 13948638 - 13948584
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||| | |||||| |||||||||||||||||||||| ||||  |||||||    
T  13948638 ggttaataggcctttacctcctgtaatatagggcacttttggttttgccccctgt 13948584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 28819537 - 28819591
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||| | |||||||||||||||||||| |||||||| ||||  |||||||    
T  28819537 ggttaataggcctttaccccctgtaatataggtcacttttggttttgccccctgt 28819591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 33847782 - 33847748
Alignment:
Q  128 ttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||| ||||||||||||||||||||||||||||||    
T  33847782 ttttgccccctgtaatatagggcacttttgatttt 33847748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 39419673 - 39419643
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattct 214  Q
    |||||||||||||||||||||||||||||||    
T  39419673 ttagattccgtccttgtaaaataaagattct 39419643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 5984037 - 5984004
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||||||||||| ||||||||||||||    
T  5984037 tttaccccctgtaatatagagcacttttgatttt 5984004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 9750447 - 9750503
Alignment:
Q  116 gggttaatagacttttaccccct-gtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | |||||||||| |||||||||| |||||||| |||| ||||||||    
T  9750447 gggttaataggcctttacccccttgtaatataggtcacttttggttttgtcccctgt 9750503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 11465891 - 11465935
Alignment:
Q  118 gttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||||||||||||| |||||| | |||||||| ||||    
T  11465891 gttaatagacttttaccccctgcaatatatgtcacttttggtttt 11465935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 35599312 - 35599368
Alignment:
Q  116 gggttaatagacttttacccc-ctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||||| |||||||| |||||||||||| |||||||| ||||  |||||||    
T  35599312 gggttaatagacctttacccccctgtaatataggtcacttttggttttgccccctgt 35599368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 40434544 - 40434588
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| |||||||||||| ||||||||||| ||||| ||||    
T  40434544 ttagattccatccttgtaaaatgaagattcttcacgattgtcccc 40434588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 56169 - 56057
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   |||||||||||||||||||||||||||||||||| ||||||||            |||||||||||| ||||||||| |||||||||    
T  56169 gggttaataggtctttaccccctgtaatatagggcacttttgattttgtcccctgtaattttttttttttagattccgtcgttgtaaaatgaagattctt 56070  T
Q  216 caggattgccccc 228  Q
    || ||||||||||    
T  56069 cacgattgccccc 56057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 24234398 - 24234450
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  24234398 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 24234450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 33485060 - 33485020
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33485060 attccgtccttgtaaaataaagattcttcaggattgccccc 33485020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 22058318 - 22058215
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||  |||    
T  22058318 ccccctgtaatatagggcacttttggttttgccccctgtaaattcttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccttgag 22058219  T
Q  233 ccct 236  Q
    ||||    
T  22058218 ccct 22058215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 24914456 - 24914551
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||| |||||||||||||  |||||||            |||||||||||||||||||||| ||||||||||| ||||||||||    
T  24914456 ccccctgtaatataggacacttttgattttgccccctgtaattttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 24914551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 6000657 - 6000615
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  6000657 agattccatccttgtaaaataaagattcttcaggattgccccc 6000615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 12322842 - 12322748
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||||||||  |||||||            |||||||||||||||||||||| ||||||||||| ||||||||||    
T  12322842 ccccctgtaatatagggcacttttgattttgccccctgtaattttttttt-ttagattccgtccttgtaaaatgaagattcttcacgattgccccc 12322748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 22056502 - 22056600
Alignment:
Q  135 ccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgagc 233  Q
    ||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  22056502 ccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagc 22056600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 24235688 - 24235567
Alignment:
Q  116 gggttaatagacttttacccc-ctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattct 214  Q
    ||||||||||   |||||||| ||||||||||||||||||||| ||||  |||||||            |||||||| ||||||||||||| ||||||||    
T  24235688 gggttaataggtctttacccctctgtaatatagggcacttttggttttgccccctgtaaaaatttatttttagattctgtccttgtaaaatgaagattct 24235589  T
Q  215 tcaggattgccccccgagccct 236  Q
    ||| |||||||||| |||||||    
T  24235588 tcaagattgccccctgagccct 24235567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 6759073 - 6759106
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttca 217  Q
    ||||||||||||||||||||||||||||||||||    
T  6759073 ttagattccgtccttgtaaaataaagattcttca 6759106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 54874 - 54918
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||    
T  54874 ttagattccgtccttgtaaaatgaagattattcacgattgccccc 54918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11424830 - 11424870
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  11424830 attccatccttgtaaaataaagattcttcaggattgtcccc 11424870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 3119320 - 3119375
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||||||||| |||||| |||||||  |||||||| |||| ||||||||    
T  3119320 gggttaatagacttttatcccctgcaatatagatcacttttggttttctcccctgt 3119375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 28583547 - 28583602
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||  ||||||||| |||||||||||||||||||| ||||  |||||||    
T  28583547 gggttaatagtgttttaccccgtgtaatatagggcacttttggtttttgcccctgt 28583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 5999793 - 5999827
Alignment:
Q  199 gtaaaataaagattcttcaggattgccccccgagc 233  Q
    |||||||||||||||||||||||||||||| ||||    
T  5999793 gtaaaataaagattcttcaggattgccccctgagc 5999827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 6000728 - 6000682
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  6000728 gggttaatagagctttaccccctgtaatatagagcacttttggtttt 6000682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 12321632 - 12321674
Alignment:
Q  185 tagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||| |||||||||||||| ||||||||||| |||||||||    
T  12321632 tagatttcgtccttgtaaaatgaagattcttcacgattgcccc 12321674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 21939189 - 21939223
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcag 218  Q
    ||||||||||||||||||||||| |||||||||||    
T  21939189 ttagattccgtccttgtaaaatatagattcttcag 21939223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 22253265 - 22253235
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattct 214  Q
    |||||||||||||||||||||||||||||||    
T  22253265 ttagattccgtccttgtaaaataaagattct 22253235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 32614172 - 32614226
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctg 170  Q
    |||||||||| | ||||||| |||||||||||| |||||| |||||| |||||||    
T  32614172 gggttaataggcctttaccctctgtaatataggccactttcgattttgtcccctg 32614226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 9234815 - 9234847
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagg 148  Q
    ||||||||||| |||||||||||||||||||||    
T  9234815 gggttaatagagttttaccccctgtaatatagg 9234847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 11425825 - 11425785
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcactttt 156  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  11425825 gggttaatagtgttttatcccctgtaatatagggcactttt 11425785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 27164702 - 27164595
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| ||||||||||    
T  27164702 tttaccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 27164603  T
Q  229 cgagccct 236  Q
     |||||||    
T  27164602 tgagccct 27164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 27163134 - 27163237
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  27163134 ccccctgtaatatagggcacttttggttttggcccctgtaaaaaaatttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 27163233  T
Q  233 ccct 236  Q
    ||||    
T  27163234 ccct 27163237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 39810126 - 39810023
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  39810126 ccccctgtaatatagggcacttttggttttgccccctgtaaattattttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 39810027  T
Q  233 ccct 236  Q
    ||||    
T  39810026 ccct 39810023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 6105624 - 6105668
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  6105624 ttagattccgtacttgtaaaataaagattcttcaggattgccccc 6105668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 39808666 - 39808768
Alignment:
Q  134 cccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgagc 233  Q
    |||||||||||||||||||||||| ||||  |||||||            |||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  39808666 cccctgtaatatagggcacttttggttttgccccctgtaaaaaaaaaaatttagattctgtccttgtaaaatgaagattcttcaagattgccccctgagc 39808765  T
Q  234 cct 236  Q
    |||    
T  39808766 cct 39808768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 1601242 - 1601198
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  1601242 ttagattccgtccttgtaaaatgaagattcttcacgattgccccc 1601198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 3252231 - 3252275
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  3252231 ttagattccgtccttataaaataaagattcttcacgattgccccc 3252275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 5704519 - 5704467
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    ||||||| |||||||||||||||||||||||||| |||| ||||| |||||||    
T  5704519 ttagatttcgtccttgtaaaataaagattcttcaagattaccccctgagccct 5704467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 9768344 - 9768260
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttca 217  Q
    |||||||||||||||| ||||||||||||| ||||||||            |||||||||||||||||||||| |||||||||||    
T  9768344 ccccctgtaatataggtcacttttgattttgtcccctgtaaaaaaattcttttagattccgtccttgtaaaatcaagattcttca 9768260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 28574607 - 28574651
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  28574607 ttagattccgtccttttaaaataaagattcttcaagattgccccc 28574651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 28562008 - 28561969
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattg 223  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28562008 ttagattccgtccttgtaaaataaagattcttcaagattg 28561969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 28567506 - 28567467
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattg 223  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28567506 ttagattccgtccttgtaaaataaagattcttcaagattg 28567467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 39913923 - 39913880
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  39913923 ttagattccgtccttgtaaaatgaagattcttcacgattgcccc 39913880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 34901503 - 34901557
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||  |||||||    
T  34901503 ggttaataggcttttaccccctgtaatataggtcacttttggttttgccccctgt 34901557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 42350166 - 42350124
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  42350166 ttagattccgtccttgtaaaatgaagattcttcaagattgccc 42350124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 1600143 - 1600187
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||    
T  1600143 ttagattccgtccttataaaatgaagattcttcacgattgccccc 1600187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 1602887 - 1602843
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||    
T  1602887 ttagattccgtccttgtataatgaagattcttcacgattgccccc 1602843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 5703121 - 5703165
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||    
T  5703121 ttagatttcgtccttgtaaaataaagattcttcaagattgtcccc 5703165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 28561435 - 28561475
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttg 157  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  28561435 ggttaatagagctttaccccctgtaatatagggcacttttg 28561475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 28566933 - 28566973
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttg 157  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  28566933 ggttaatagagctttaccccctgtaatatagggcacttttg 28566973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 1601673 - 1601720
Alignment:
Q  116 gggttaatagacttttacccc-ctgtaatatagggcacttttgatttt 162  Q
    |||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  1601673 gggttaatagacctttacccctctgtaatatagggcacttttggtttt 1601720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 39513867 - 39513922
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||  |||||||    
T  39513867 gggttaataggcatttaccccctgtaatataggtcacttttggttttgccccctgt 39513922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 19158211 - 19158169
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||||||||||||| || |||||||||||||| ||||    
T  19158211 tttaccccctgtaatataggtcatttttgattttatcctctgt 19158169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 24359032 - 24359062
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattct 214  Q
    |||||||||||||||||||||||||||||||    
T  24359032 ttagattccgtccttgtaaaataaagattct 24359062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 28575101 - 28575059
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||    
T  28575101 ttagatttcgtccttataaaataaagattcttcaagattgccc 28575059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 21397871 - 21397838
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttca 217  Q
    ||||||| ||||||||||||||||||||||||||    
T  21397871 ttagatttcgtccttgtaaaataaagattcttca 21397838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 21792364 - 21792331
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttca 217  Q
    ||||||| ||||||||||||||||||||||||||    
T  21792364 ttagatttcgtccttgtaaaataaagattcttca 21792331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 24359708 - 24359675
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttca 217  Q
    ||||||| ||||||||||||||||||||||||||    
T  24359708 ttagatttcgtccttgtaaaataaagattcttca 24359675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 28561502 - 28561543
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  28561502 ttagattctgtccttgtaaaataaggattcttcaagattgcc 28561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 28567000 - 28567041
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  28567000 ttagattctgtccttgtaaaataaggattcttcaagattgcc 28567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 1601743 - 1601783
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||| ||||||| ||||||||||| ||||||||||    
T  1601743 attccgtcctagtaaaatgaagattcttcacgattgccccc 1601783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 8304215 - 8304179
Alignment:
Q  135 ccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  8304215 ccctgtaatatagtgcacttttgattttagcccctgt 8304179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 40702067 - 40702027
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcactttt 156  Q
    |||||||||| | |||||||||||||||||||| |||||||    
T  40702067 gggttaataggcctttaccccctgtaatataggtcactttt 40702027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 42349033 - 42349073
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  42349033 attccgtccttgtaaaatgaagattcttcaagattgtcccc 42349073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 10615288 - 10615395
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| ||||||||||    
T  10615288 tttaccccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 10615387  T
Q  229 cgagccct 236  Q
     |||||||    
T  10615388 tgagccct 10615395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 22257323 - 22257268
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  22257323 ttagattctgtccttgtaaaataaagattcttcaggatttccccccgagccctttg 22257268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 46610009 - 46610129
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| |||||||||    
T  46610009 gggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgtaattttttttttttagattccgtccttgtaaaatgaagattctt 46610108  T
Q  216 caggattgccccccgagccct 236  Q
    || |||||| ||| |||||||    
T  46610109 caagattgctccctgagccct 46610129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 46596095 - 46596206
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    |||||||||||  ||||||||||||||||||||| ||||||| |||| |||| |||            ||||||||| || |||||||||||||||||||    
T  46596095 gggttaatagagctttaccccctgtaatatagggtacttttggttttgtcccatgtaaaaaaaaaaacttagattccatcattgtaaaataaagattctt 46596194  T
Q  216 caggattgcccc 227  Q
    ||||||||||||    
T  46596195 caggattgcccc 46596206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 15093771 - 15093658
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnntt-agattccgtccttgtaaaataaagattct 214  Q
    |||||||||||  |||||||||| |||||||||| ||||||||||||  |||||||            || ||||||| |||||||||||||||||||||    
T  15093771 gggttaatagaactttaccccctataatatagggtacttttgattttgccccctgtaaattttttttttttagattccatccttgtaaaataaagattct 15093672  T
Q  215 tcaggattgccccc 228  Q
    ||||||||||||||    
T  15093671 tcaggattgccccc 15093658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 28208202 - 28208090
Alignment:
Q  116 gggttaatagacttttaccccc-tgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattct 214  Q
    |||||||||||  ||||||||| |||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||||||||||||    
T  28208202 gggttaatagagctttacccccctgtaatatagggcacttttggttttc-cccctgtaattttttttttttagattccgtccttgtaaaataaagattct 28208104  T
Q  215 tcaggattgccccc 228  Q
    ||| ||||||||||    
T  28208103 tcaagattgccccc 28208090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 10616760 - 10616708
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  10616760 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 10616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 48288349 - 48288298
Alignment:
Q  185 tagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||||    
T  48288349 tagattccgtccttgtaaaataaagattcttcaggatcgcctcctgagccct 48288298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 2011124 - 2011166
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  2011124 ttagattctgtccttgtaaaataaagattcttcaggattgccc 2011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 12210028 - 12210074
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  12210028 gggttaatagacttttaccccctgtaatataggtcacttttggtttt 12210074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 18704953 - 18705066
Alignment:
Q  116 gggttaatagacttttaccccct-gtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattct 214  Q
    |||||||||||  |||||||||  ||||||||||||||||||| ||||  |||||||            ||||||||| ||||||| |||||||||||||    
T  18704953 gggttaatagagctttaccccccagtaatatagggcacttttggttttcccccctgtaaatttttttttttagattccttccttgtcaaataaagattct 18705052  T
Q  215 tcaggattgccccc 228  Q
    ||||||||||||||    
T  18705053 tcaggattgccccc 18705066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 37976037 - 37976078
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  37976037 ttagattccgtccttgtaaaataaagattctccaggattgcc 37976078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 27315262 - 27315306
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  27315262 ttagatcccgtccttgtaaaataaagatttttcaggattgccccc 27315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 43930789 - 43930745
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||    
T  43930789 ttagattccatccttgtaaaataaagattcttcaagattgccccc 43930745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 46597565 - 46597453
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||  | |||||            |||||||||||||||||||||| |||||||||    
T  46597565 gggttaataggtctttaccccctgtaatatagggcacttttggttttgcctcctgtaaaaaaatcaatttagattccgtccttgtaaaatgaagattctt 46597466  T
Q  216 caggattgccccc 228  Q
    ||  |||||||||    
T  46597465 cacaattgccccc 46597453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 14824769 - 14824852
Alignment:
Q  134 cccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttca 217  Q
    ||||||||||||||| |||||||||||||  |||||||            ||||||||||||||||||||||||||||||||||    
T  14824769 cccctgtaatataggtcacttttgattttgccccctgtaaaatattttttttagattccgtccttgtaaaataaagattcttca 14824852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 15086240 - 15086335
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| |||||||||||  |||||||||    
T  15086240 ccccctgtaatatagggcacttttggttttgccccctgtaaaaaaaaatatttagattccgtccttgtaaaatgaagattcttcacaattgccccc 15086335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 41749386 - 41749441
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | |||||||| ||||||||||| ||||||||||||| ||||||||    
T  41749386 gggttaataggcctttaccccttgtaatataggtcacttttgattttctcccctgt 41749441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 12066229 - 12066275
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||    
T  12066229 gggttaatagttttttaccccctgtaatataggtcacttttgatttt 12066275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 14826064 - 14826030
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcag 218  Q
    |||||||||||||||||||||||||||||||||||    
T  14826064 ttagattccgtccttgtaaaataaagattcttcag 14826030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 14996021 - 14995979
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  14996021 ttagatttcgtccttgtaaaataaagattcttcagtattgccc 14995979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 2011949 - 2011905
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  2011949 ttagattctatccttgtaaaataaagattcttcaggattgtcccc 2011905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 22256271 - 22256315
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||    
T  22256271 ttagattccgtccttgtaaaatgaagattcttcacgattaccccc 22256315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 37977498 - 37977454
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||    
T  37977498 ttagattccgtccttgtaaaatgaagaatcttcatgattgccccc 37977454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 38842186 - 38842222
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcagga 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  38842186 ttagattctgtccttgtaaaataaagattcttcagga 38842222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 12071583 - 12071614
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||||||||||||||||||||||||    
T  12071583 ttagattccgtccttgtaaaataaagattctt 12071614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 18142254 - 18142199
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||  |||||||    
T  18142254 gggttaataggcctttaccccctgtaatataggtcacttttggttttgccccctgt 18142199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 28207059 - 28207098
Alignment:
Q  197 ttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  28207059 ttgtaaaataaagattcttcaagattgccccctgagccct 28207098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 54566512 - 54566566
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||    
T  54566512 gggttaatagacctttacccc-tgtaatataggtcacttttggttttgtcccctgt 54566566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 3190617 - 3190583
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcag 218  Q
    |||||||||| ||||||||||||||||||||||||    
T  3190617 ttagattccgcccttgtaaaataaagattcttcag 3190583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 18140940 - 18140986
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||    
T  18140940 gggttaataggcctttaccccctgtaatataggtcacttttggtttt 18140986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 46207113 - 46207159
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||| |||| |||||| |||||||| |||||||||||||    
T  46207113 gggttaatagacatttatcccctgcaatataggtcacttttgatttt 46207159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 51116279 - 51116313
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcag 218  Q
    |||||||| ||||||||||||||||||||||||||    
T  51116279 ttagattcagtccttgtaaaataaagattcttcag 51116313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 27318151 - 27318188
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattg 223  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  27318151 agattctgtctttgtaaaataaagattcttcaggattg 27318188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 23539332 - 23539376
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| |||| ||||||| ||||||||| ||||||||||||    
T  23539332 ttagattccatcctcgtaaaatgaagattctttaggattgccccc 23539376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 23545514 - 23545470
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| || | ||||||| ||||||||||||||||||||||    
T  23545514 ttagattccatcatcgtaaaatgaagattcttcaggattgccccc 23545470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 8930403 - 8930292
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||| ||||||||||||||||||| || ||||||| |||| ||||||||            ||||||| ||||||||||||||||||||||||    
T  8930403 gggttaatagagttttaccccctgtaatataaggtacttttggttttgtcccctgtaaaaaaaaaaa-ttagatttcgtccttgtaaaataaagattctt 8930305  T
Q  216 caggattgccccc 228  Q
    |||||||||||||    
T  8930304 caggattgccccc 8930292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 13917327 - 13917208
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||            ||||||||||||||||||||||||||||||||    
T  13917327 gggttaatagagttttatcccctgtaatataggacacttttggttttctcccctgtaatttttattt-ttagattccgtccttgtaaaataaagattctt 13917229  T
Q  216 caggattgccccccgagccct 236  Q
    || ||||||| || |||||||    
T  13917228 caagattgcctcctgagccct 13917208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 52084865 - 52084764
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||| ||||||||| |||| ||||||||            |||||||||||||||||||||||||||||||||| |||||||||| |||    
T  52084865 ccccctgtaatatagagcacttttggttttgtcccctgtaaaattttttttttagattccgtccttgtaaaataaagattcttcaagattgccccctgag 52084766  T
Q  233 cc 234  Q
    ||    
T  52084765 cc 52084764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 44311275 - 44311330
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  44311275 ttagattccgtccatgtaaaataaagattcttcaagattgccccccgtgccctttg 44311330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 5560940 - 5560984
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  5560940 ttagattccgtccttgtaaaataaagattcttcaagattgccccc 5560984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 9441636 - 9441688
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  9441636 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 9441688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 9442978 - 9442926
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  9442978 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 9442926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 14625370 - 14625490
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   |||||||||||||||||||| |||||||| ||||  |||||||            |||||||||||||||||||||| |||||||||    
T  14625370 gggttaataggtctttaccccctgtaatataggacacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattctt 14625469  T
Q  216 caggattgccccccgagccct 236  Q
    || |||||||| | |||||||    
T  14625470 caagattgccctctgagccct 14625490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 14626767 - 14626716
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccc 235  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  14626767 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccc 14626716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 37194478 - 37194435
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  37194478 ttagattccgtccttgtaaaataaagattcttcaagattgcccc 37194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 13916159 - 13916201
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  13916159 ttagattccgtccttgtaaaataaagattcttcaagattgccc 13916201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 30536435 - 30536476
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  30536435 ttagattccgtccttgtaaaataaagattcttcatgattgcc 30536476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 37193546 - 37193590
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||    
T  37193546 ttagattccatccttgtaaaataaagattcttcaagattgccccc 37193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 37269649 - 37269605
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||    
T  37269649 ttagatttcgtccttgtacaataaagattcttcaggattgccccc 37269605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 4487608 - 4487651
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  4487608 ttagattttgtccttgtaaaataaagattcttcaggattgcccc 4487651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 23321332 - 23321375
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  23321332 ttagattccgtccttgtaaaatgaagattcttcacgattgcccc 23321375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 23322598 - 23322556
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  23322598 ttagattccgtccttgtaaaatgaagattcttcacgattgccc 23322556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 38742438 - 38742392
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||    
T  38742438 gggttaatagagctttaccccctgtaatatagggtacttttgatttt 38742392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 2273568 - 2273608
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgc 224  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  2273568 ttagattccgtccttgtaaaatgaagattcttcacgattgc 2273608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 6077008 - 6077052
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  6077008 ttagatttcgtccttgtaaaatgaagattcttcacgattgccccc 6077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 27548948 - 27548892
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc-ccccgagccctttg 239  Q
    ||||||| |||||||||||||| |||||||||||| |||||| ||||||| ||||||    
T  27548948 ttagatttcgtccttgtaaaattaagattcttcagtattgcctccccgaggcctttg 27548892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 30537501 - 30537457
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||    
T  30537501 ttagataccgtccttataaaataaagattcttcaggattgtcccc 30537457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 31648075 - 31648131
Alignment:
Q  116 gggttaatagacttttaccccc-tgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | ||||||||| ||||||||||| |||||||| |||||||||||||    
T  31648075 gggttaataggcctttacccccatgtaatataggtcacttttggttttatcccctgt 31648131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 37268891 - 37268935
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  37268891 ttagattccgttcttataaaataaaaattcttcaggattgccccc 37268935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 38741543 - 38741587
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||    
T  38741543 ttagatttcatccttgtaaaataaagattcttcagaattgccccc 38741587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 8928815 - 8928870
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||   |||||||||||||||||| |||||||||||||||  |||||||    
T  8928815 gggttaataggtctttaccccctgtaatataaggcacttttgattttgccccctgt 8928870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 16786205 - 16786150
Alignment:
Q  117 ggttaatagacttttaccccc-tgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||  ||||||||| ||||||||||| |||||||||||||| |||||||    
T  16786205 ggttaatagagctttacccccatgtaatataggtcacttttgattttaccccctgt 16786150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 47145146 - 47145193
Alignment:
Q  116 gggttaatagacttttacccc-ctgtaatatagggcacttttgatttt 162  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||||    
T  47145146 gggttaatagacctttacccccctgtaatataggtcacttttgatttt 47145193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 49201442 - 49201387
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| ||||||||||||| |||||||| |||||||| ||||  |||||||    
T  49201442 gggttaataggcttttaccccctgcaatataggtcacttttggttttcccccctgt 49201387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 2274649 - 2274607
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  2274649 agattccgtccttgtaaaatgaagattcttcacgattgtcccc 2274607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 13903428 - 13903382
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||  |||||||||||||||||||| |||||||| ||||    
T  13903428 gggttaatagatctttaccccctgtaatataggtcacttttggtttt 13903382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 24545457 - 24545503
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||| |||||||||||| ||||||||| |||||||| ||||    
T  24545457 gggttaataggcttttaccccctataatataggtcacttttggtttt 24545503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 24963060 - 24963014
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||| ||||||||||||||||||||||  | ||||||||||    
T  24963060 gggttaataggcttttaccccctgtaatataggttatttttgatttt 24963014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 31648642 - 31648588
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||| ||||||||||||||||||||  | ||||| |||| ||||||||    
T  31648642 ggttaatagacctttaccccctgtaatataggttatttttggttttgtcccctgt 31648588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 33645014 - 33645060
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||||    
T  33645014 gggttattagatctttaccccctgtaatataggtcacttttgatttt 33645060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 43635835 - 43635881
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||    
T  43635835 gggttaataggtctttaccccctgtaatatagggcacttttggtttt 43635881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 44311208 - 44311254
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||    
T  44311208 gggttaataggcctttaccccctgtaatataggacacttttgctttt 44311254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 40246277 - 40246322
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattt 161  Q
    |||||||||| | ||||||||||||||||||  |||||||||||||    
T  40246277 gggttaataggcatttaccccctgtaatataacgcacttttgattt 40246322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 8984853 - 8984909
Alignment:
Q  116 gggttaatagacttttaccccc-tgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||| ||||| |||| ||||||||||| |||||||||||||  |||||||    
T  8984853 gggttaatagagttttagccccatgtaatataggccacttttgattttgccccctgt 8984909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 43635901 - 43635945
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||| ||||||||||| ||||| ||||    
T  43635901 ttagatttcgtccttgtaaaatgaagattcttcacgattgacccc 43635945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 21994340 - 21994437
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||| ||||||||||||| ||||||||            |||||||||||||||||||||||||||||||| ||||||||||||    
T  21994340 tttaccccctgtaatataggacacttttgattttgtcccctgtaatttttttt--ttagattccgtccttgtaaaataaagattctttaggattgccccc 21994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 20962194 - 20962314
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    |||||||||||  |||||||||||||||||| |||||||||| ||||  |||||||            |||||||||||||||||||||| |||||||||    
T  20962194 gggttaatagatctttaccccctgtaatatatggcacttttggttttgccccctgtaaaaatttttttttagattccgtccttgtaaaatgaagattctt 20962293  T
Q  216 caggattgccccccgagccct 236  Q
    || ||||||| || |||||||    
T  20962294 caagattgcctcctgagccct 20962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 29248242 - 29248362
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   |||||||||||||||||||| |||||||| ||||| || ||||            |||||||||||||||||||||| |||||||||    
T  29248242 gggttaataggtctttaccccctgtaatataggacacttttggttttacccgctgtaaatttatttttttagattccgtccttgtaaaatgaagattctt 29248341  T
Q  216 caggattgccccccgagccct 236  Q
    || |||||||||| |||||||    
T  29248342 caagattgccccctgagccct 29248362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 43537519 - 43537563
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43537519 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 43537563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 34739906 - 34740009
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  34739906 ccccctgtaatatagggcacttttggttttggcccctgtaaaaaaatttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 34740005  T
Q  233 ccct 236  Q
    ||||    
T  34740006 ccct 34740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 34741433 - 34741330
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  34741433 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 34741334  T
Q  233 ccct 236  Q
    ||||    
T  34741333 ccct 34741330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 51754187 - 51754144
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  51754187 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 51754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 29249698 - 29249646
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||    
T  29249698 ttagatttcgtccttgtaaaataaagattcttcaagattgccccctgagccct 29249646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 54555338 - 54555283
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    |||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  54555338 ttagattatgtccttgtaaaataaagattcttcacgattgcccctcgagccctttg 54555283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 43537826 - 43537776
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagcc 234  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  43537826 ttagattccgtccttctaaaataaaaattcttcaggattgccccctgagcc 43537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 50879976 - 50880026
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagcc 234  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  50879976 ttagattccgtcctggtaaaataaagatttttcaggattgccccctgagcc 50880026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 51752696 - 51752794
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||||||||| | |||||||||||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||    
T  51752696 tttaccccctgtaatatatgacacttttgattttgccccctgtaaaaaaaataaattagattccgtccttgtaaaatgaagattcttcacgattgcccc 51752794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 12566996 - 12566875
Alignment:
Q  116 gggttaatagacttttaccccct-gtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattct 214  Q
    ||||||||||   |||||||||| ||||||||||||||||||| ||||  |||||||            |||||||| ||||||||||||| ||||||||    
T  12566996 gggttaataggtctttacccccttgtaatatagggcacttttggttttgccccctgtaaaatttgtttcttagattctgtccttgtaaaatgaagattct 12566897  T
Q  215 tcaggattgccccccgagccct 236  Q
    ||| |||||||||| |||||||    
T  12566896 tcaagattgccccctgagccct 12566875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 2438320 - 2438360
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgc 224  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  2438320 ttagattccatccttgtaaaataaagattcttcaggattgc 2438360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 20963688 - 20963636
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||| |||||||    
T  20963688 ttagattccgtccttgtaaaatgaagattcttcaagattgtcccctgagccct 20963636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 37421890 - 37421848
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  37421890 ttagattccatccttgtaaaataaagattattcaggattgccc 37421848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 46426169 - 46426211
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  46426169 ttagattccgtccttgtaaaataaagattcttcaaaattgccc 46426211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 49629701 - 49629739
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggatt 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49629701 ttagattccgtcctggtaaaataaagattcttcaggatt 49629739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 9410269 - 9410225
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||    
T  9410269 ttagatttcatccttgtaaaataaagattcttcagtattgccccc 9410225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 9410340 - 9410284
Alignment:
Q  116 gggttaatagacttttacccc-ctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  9410340 gggttaatagtgttttacccctctgtaatatagggcacttttggttttgtcccctgt 9410284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 37600875 - 37600911
Alignment:
Q  187 gattccgtccttgtaaaataaagattcttcaggattg 223  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37600875 gattccgtccttgtaaaataaagattctttaggattg 37600911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 40479501 - 40479461
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  40479501 attccgtccttgtaaaatgaagattcttcacgattgccccc 40479461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 55499319 - 55499363
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||    
T  55499319 ttagattccgtccttgtaaaatgaagatttttcacgattgccccc 55499363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 34027251 - 34027196
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||  |||||||    
T  34027251 gggttaataggcctttaccccctgtaatataggtcacttttggttttgccccctgt 34027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 46427230 - 46427183
Alignment:
Q  189 ttccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||| |||||||||||||| ||| |||||||||| |||||||    
T  46427230 ttccgtccttataaaataaagattcatcaagattgccccctgagccct 46427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 50881412 - 50881369
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||    
T  50881412 ttagattccgtcattgtaaaatgaagattcttcacgattgcccc 50881369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 51754257 - 51754202
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||||  ||||||||||||||||||||| ||||||| |||| || |||||    
T  51754257 gggttaatagagctttaccccctgtaatatagggtacttttggttttgtcacctgt 51754202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 54554383 - 54554438
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||  |||||||    
T  54554383 gggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctgt 54554438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 14183611 - 14183657
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||    
T  14183611 gggttaatagtgttttaccccctctaatatagggcacttttggtttt 14183657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 15694529 - 15694571
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccc 226  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||    
T  15694529 ttagattcggtcctcgtaaaatgaagattcttcaggattgccc 15694571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 52264512 - 52264546
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcag 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  52264512 ttagattccgtccttgtaaaatcaagattcttcag 52264546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 49629635 - 49629687
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccct 169  Q
    |||||||||||| |||||||||||||| ||||| |||||||| |||| ||||||    
T  49629635 gggttaatagacctttaccccctgtaa-ataggacacttttggttttgtcccct 49629687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 9410076 - 9410112
Alignment:
Q  192 cgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  9410076 cgtccttgtaaaataaatattcttcagtattgccccc 9410112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 12352514 - 12352470
Alignment:
Q  118 gttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||| | |||||||||||||||||||| |||||||| ||||    
T  12352514 gttaataggcctttaccccctgtaatataggtcacttttggtttt 12352470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 15695165 - 15695121
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||| ||||||| ||||||||||||||||| ||||    
T  15695165 ttagatttcgtcctcgtaaaatgaagattcttcaggattgtcccc 15695121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 49630586 - 49630546
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgc 224  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  49630586 ttagattccgtccttgtaaaatgaagatttttcacgattgc 49630546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 55500393 - 55500349
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||||||    
T  55500393 ttagattccatccctgtaaaatgaagattcttcacgattgccccc 55500349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 11557 - 11513
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11557 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 11513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 10080 - 10192
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||  ||||  |||||||            |||||||| ||||||||||||| |||||||||    
T  10080 gggttaataggtctttaccccctgtaatatagggcacttttagttttgccccctgtaaaaaaaaaaaattagattcagtccttgtaaaatgaagattctt 10179  T
Q  216 caggattgccccc 228  Q
    ||  |||||||||    
T  10180 cacaattgccccc 10192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 37380 - 37336
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37380 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 37336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 30793 - 30839
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccg 230  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  30793 ttagattccgtccttgtaaaataaagattcttcagtatttccccccg 30839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 21903993 - 21904045
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  21903993 ttagattccgtccttgtaaaataaagattcttcaagattgccccctgagccct 21904045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 38876058 - 38876110
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  38876058 ttagattccgtccttgtaaaataaagattcttcaagattgccccctgagccct 38876110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 38877010 - 38876958
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  38877010 ttagattccgtccttgtaaaataaagattcttcaagattgccccctgagccct 38876958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 38937565 - 38937445
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||  ||||| |            |||||||||||||||||||||| |||||||||    
T  38937565 gggttaataggtctttaccccctgtaatatagggcacttttggttttgccccctataaaaaaaaaaaattagattccgtccttgtaaaatgaagattctt 38937466  T
Q  216 caggattgccccccgagccct 236  Q
    || |||||||||| |||||||    
T  38937465 caagattgccccctgagccct 38937445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 1902948 - 1903051
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  1902948 ccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 1903047  T
Q  233 ccct 236  Q
    ||||    
T  1903048 ccct 1903051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 1904448 - 1904345
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  1904448 ccccctgtaatatagggcacttttggttttgccccctgtgaaaaaaaatttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgag 1904349  T
Q  233 ccct 236  Q
    ||||    
T  1904348 ccct 1904345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 18416662 - 18416611
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccc 235  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  18416662 ttagattccgtcctcgtaaaataaagattctttaggattgccccccgagccc 18416611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 22293533 - 22293478
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  22293533 ttagattcggtccttgtaaaataaagattcttcagtattgccccccaagccctttg 22293478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 36565304 - 36565347
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36565304 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 36565347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 7577816 - 7577715
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgag 232  Q
    ||||||||||||||||||||||||| ||||| |||||||            |||||||||||||||||||||| ||||||| ||| |||||||||| |||    
T  7577816 ccccctgtaatatagggcacttttggttttaccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcatcaagattgccccctgag 7577717  T
Q  233 cc 234  Q
    ||    
T  7577716 cc 7577715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 38815082 - 38815030
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  38815082 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 38815030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 38936012 - 38936064
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  38936012 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 38936064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 38936998 - 38937050
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  38936998 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 38937050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 16670512 - 16670611
Alignment:
Q  129 tttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||||||||||| ||||  |||||||            |||||||||||| ||||||||| ||||||||||| ||||||||||    
T  16670512 tttaccccctgtaatatagggcacttttggttttgccccctgtaattttttttttttagattccgtcattgtaaaatgaagattcttcacgattgccccc 16670611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 41307136 - 41307081
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    ||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||    
T  41307136 ttagatttcgtctttgtaaaataaatattcttcaagattgccccccgagccctttg 41307081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 7576343 - 7576437
Alignment:
Q  133 ccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    ||||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||    
T  7576343 ccccctgtaatatagggcacttttggttttgccccctgtaaaatattttttttagattccgtccttgtaaaatgaagattcttcaagattgcccc 7576437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 44366887 - 44366985
Alignment:
Q  135 ccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattcttcaggattgccccccgagc 233  Q
    ||||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  44366887 ccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagc 44366985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 10355076 - 10355120
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
T  10355076 ttagattccgtccttgtcaaataaagattcttcaggattgtcccc 10355120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 15747751 - 15747806
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||||| |||||||||||||||||||| |||||||| |||| | ||||||    
T  15747751 gggttaatagacctttaccccctgtaatataggtcacttttggttttgttccctgt 15747806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 39151306 - 39151251
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    |||||||| |||||||||||||||||||||||||| |||||| ||  |||||||||    
T  39151306 ttagattctgtccttgtaaaataaagattcttcagaattgcctcctaagccctttg 39151251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 11101163 - 11101211
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagc 233  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  11101163 ttagattccgtccttg-aaaataaagattcttcaagattgccccctgagc 11101211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 28756533 - 28756488
Alignment:
Q  192 cgtccttgtaaaataaagattcttcaggattgccccccgagccctt 237  Q
    |||||| ||||||||||||||||||||||||||||| ||| |||||    
T  28756533 cgtcctcgtaaaataaagattcttcaggattgccccacgaaccctt 28756488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 5969797 - 5969841
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||    
T  5969797 ttagattccgtccttgtaaaataaagattcttaatgattgtcccc 5969841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 10355301 - 10355265
Alignment:
Q  192 cgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10355301 cgtccttgtaaaataaagattcttcaggattgtcccc 10355265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 18249699 - 18249743
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||    
T  18249699 ttagattctgtccttgtaaaatgaagattcttcacgattgccccc 18249743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 23834649 - 23834693
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||    
T  23834649 ttagattccgtccttgtaaaatgaagattcttcacgattgtcccc 23834693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 38813644 - 38813688
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| || |||||||| ||||||||||    
T  38813644 ttagattccgtccttgtaaaatgaatattcttcaagattgccccc 38813688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 41305950 - 41305994
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  41305950 ttagattccgtccttgtaaaatgaagcttcttcacgattgccccc 41305994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 44368373 - 44368329
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||    
T  44368373 ttagattccgtccttgtataatgaagattcttcacgattgccccc 44368329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 11102154 - 11102115
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattg 223  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  11102154 ttagattccgtccttttaaaataaagattcttcaagattg 11102115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 16671791 - 16671748
Alignment:
Q  185 tagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||    
T  16671791 tagattccgttcttgtaaaatgaagattcttcacgattgccccc 16671748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 18250878 - 18250839
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattg 223  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  18250878 ttagattccgtccttgtaaaatgaagattcttcacgattg 18250839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 19686236 - 19686190
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||    
T  19686236 gggttaatagtgctttaccccctgtaatatagggcacttttggtttt 19686190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 8238055 - 8238088
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttca 217  Q
    |||||||| |||||||||||||||||||||||||    
T  8238055 ttagattcggtccttgtaaaataaagattcttca 8238088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 34404646 - 34404601
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||| |||||||||||||||||||| | |||||||| ||||    
T  34404646 ggttaataggcttttaccccctgtaatatatgtcacttttggtttt 34404601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 39227090 - 39227135
Alignment:
Q  117 ggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||||||| ||||||||||||||| || ||| ||||||    
T  39227090 ggttaatagacttttatcccctgtaatataggtcattttcgatttt 39227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 5970745 - 5970701
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||| |||||||||| ||||||||||| ||||| ||||    
T  5970745 ttagattccgttcttgtaaaatgaagattcttcacgattgtcccc 5970701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 12301114 - 12301070
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||  ||||| ||||||||||||||||||||||| ||||    
T  12301114 ttagattccacccttgaaaaataaagattcttcaggattgacccc 12301070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 22292547 - 22292591
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||  ||||||||||||| ||||||||||| ||||||||||    
T  22292547 ttagattttgtccttgtaaaatgaagattcttcacgattgccccc 22292591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 23835829 - 23835789
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcactttt 156  Q
    ||||||||||   ||||||||||||||||||||||||||||    
T  23835829 gggttaataggtctttaccccctgtaatatagggcactttt 23835789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 28141691 - 28141735
Alignment:
Q  119 ttaatagacttttaccccctgtaatatagggcacttttgatttta 163  Q
    ||||||||  |||||||||||||||||||| |||||||| |||||    
T  28141691 ttaatagatctttaccccctgtaatataggtcacttttggtttta 28141735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 9036 - 8995
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9036 ttagattccgtccttgtaaaataaagattcttcaggattgcc 8995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 24922 - 24882
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24922 attccgtccttgtaaaataaagattcttcaggattgccccc 24882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 64571 - 64615
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  64571 ttagatttcgtccttgtaaaataaagattcttcaggattgccccc 64615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 66031 - 65987
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  66031 ttagattccgtccttgtaaaatgaagattcttcacgattgccccc 65987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 1832036 - 1831925
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattctt 215  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||  |||||||            ||||||||  ||||||||||||||||||||||    
T  1832036 gggttaatagggctttaccccctgtaatatagggcacttttgatttt-ccccctgtaaatttttttttttagattctatccttgtaaaataaagattctt 1831938  T
Q  216 caggattgccccc 228  Q
    || ||||||||||    
T  1831937 caagattgccccc 1831925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 17763405 - 17763457
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  17763405 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 17763457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 17764688 - 17764636
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  17764688 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 17764636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 24436374 - 24436330
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  24436374 ttagattccgtccttgtaaaataaagattcctcaggattgccccc 24436330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 48170250 - 48170198
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  48170250 ttagattccgtccttgtaaaatgaagattcttcaagattgccccctgagccct 48170198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 9554317 - 9554204
Alignment:
Q  116 gggttaatagacttttaccc-cctgtaatatagggcacttttgattttatcccctgtnnnnnnnnnnnnttagattccgtccttgtaaaataaagattct 214  Q
    ||||||||| |  ||||||| |||||||||||||||||||||| ||||  |||||||            |||||||||||||||||||||| ||||||||    
T  9554317 gggttaataaatctttaccctcctgtaatatagggcacttttggttttgccccctgtaaaaaaaaaaaattagattccgtccttgtaaaatgaagattct 9554218  T
Q  215 tcaggattgccccc 228  Q
    ||| ||||||||||    
T  9554217 tcacgattgccccc 9554204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 47638806 - 47638765
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcc 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  47638806 ttagattccgtacttgtaaaataaagattcttcaggattgcc 47638765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 1830880 - 1830932
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccct 236  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||| |||||||    
T  1830880 ttagattccgtctttgtaaaataaagattcttcaagattgctccctgagccct 1830932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 9553469 - 9553513
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  9553469 ttagattccgtccttgtaaaatgaagattcttcacgattgccccc 9553513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 34158126 - 34158170
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  34158126 ttagattccgtccttgtaaaatgaagattcttcaagattgccccc 34158170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 35891075 - 35891119
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  35891075 ttagatttcgtctttgtaaaataaagattcttcaggattgccccc 35891119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 8175956 - 8175913
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  8175956 ttagattccgtccttgtaaaatagtgattcttcaggattgcccc 8175913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 23806229 - 23806283
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||||    
T  23806229 gggttaataggcttttaccccctgcaatataggtcacttttgatttt-tcccctgt 23806283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 11056803 - 11056845
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  11056803 agattccgtccttgtaaaatgaagattcttcacgattgccccc 11056845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 33757410 - 33757456
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||    
T  33757410 gggttaatagatctttaccccctgtaatataggtcacttttgatttt 33757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 13772629 - 13772580
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagc 233  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||| ||||    
T  13772629 ttagattccatccttgtaaaataaagattcttcaagattaccccctgagc 13772580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 20164480 - 20164425
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||  ||||||||||||||||||||| || ||| |||||||||| ||||    
T  20164480 gggttaatagtgttttaccccctgtaatataggtcattttcgattttatccgctgt 20164425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 42509095 - 42509040
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgattttatcccctgt 171  Q
    ||||||||||  |||||||| ||||||||||||||||||||| ||||  |||||||    
T  42509095 gggttaatagtgttttaccctctgtaatatagggcacttttggttttgccccctgt 42509040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 9553400 - 9553446
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttgatttt 162  Q
    ||||||||||   ||||||||||||||||||||||||||||| ||||    
T  9553400 gggttaataggtctttaccccctgtaatatagggcacttttggtttt 9553446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 47637794 - 47637828
Alignment:
Q  194 tccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||||| ||||||||||    
T  47637794 tccttgtaaaataaagattcttcatgattgccccc 47637828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 35891010 - 35891051
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttg 157  Q
    ||||||||||| ||||||||||||||||||| || |||||||    
T  35891010 gggttaatagagttttaccccctgtaatataaggtacttttg 35891051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 5219094 - 5219038
Alignment:
Q  116 gggttaatagacttttaccccc-tgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||| | ||||||||| ||||||||||| |||||||||||||  |||||||    
T  5219094 gggttaataggcctttacccccctgtaatataggtcacttttgattttgccccctgt 5219038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 8174953 - 8174997
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  8174953 ttagattccgtctttgtaaaatgaagattcttcacgattgtcccc 8174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 11058161 - 11058117
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||| || ||||||||||||| |||||||| ||||||||||    
T  11058161 ttagattctgttcttgtaaaataaaaattcttcatgattgccccc 11058117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 22718540 - 22718512
Alignment:
Q  194 tccttgtaaaataaagattcttcaggatt 222  Q
    |||||||||||||||||||||||||||||    
T  22718540 tccttgtaaaataaagattcttcaggatt 22718512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 25274728 - 25274772
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||  ||||| ||||||||||||||||||||||| ||||    
T  25274728 ttagattccacccttgaaaaataaagattcttcaggattgacccc 25274772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 25776494 - 25776450
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| || ||||||||  |||||||||    
T  25776494 ttagattccgtccttgtaaaatgaaaattcttcacaattgccccc 25776450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 33767378 - 33767334
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  33767378 ttagattccgtctttgtaaaattaagattcttcacgattgtcccc 33767334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 37413787 - 37413831
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||| |||||| ||||| ||||||||||||||||| ||||    
T  37413787 ttagattccatccttgaaaaatgaagattcttcaggattgacccc 37413831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 275 - 220
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccccgagccctttg 239  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||    
T  275 ttagattccgtccttataaaatgaagattcttcaagattgccccctgagccctttg 220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 4776 - 4819
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgcccc 227  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  4776 ttagattccgtccttgtaaaatgaagattcttcacgattgcccc 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 5880 - 5837
Alignment:
Q  185 tagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||    
T  5880 tagattccgtccttgtaaaatgaagatacttcacgattgccccc 5837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 16697 - 16731
Alignment:
Q  194 tccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||| |||||||||||||||    
T  16697 tccttgtaaaataaagattattcaggattgccccc 16731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 2775 - 2734
Alignment:
Q  116 gggttaatagacttttaccccctgtaatatagggcacttttg 157  Q
    ||||||||||| |||||||||||||||||||||| |||||||    
T  2775 gggttaatagagttttaccccctgtaatatagggtacttttg 2734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 2697 - 2667
Alignment:
Q  193 gtccttgtaaaataaagattcttcaggattg 223  Q
    |||||||||||||||||||||||||||||||    
T  2697 gtccttgtaaaataaagattcttcaggattg 2667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 17440 - 17400
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  17440 attccgtccttgtaaaatgaagattcttcacgattgccccc 17400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 15947 - 15987
Alignment:
Q  188 attccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||| ||||||||||  ||||||||||    
T  15947 attccgtccttgtaaaatgaagattcttcgagattgccccc 15987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 36138 - 36174
Alignment:
Q  192 cgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    ||||||||||||||||||||| |||||||||||||||    
T  36138 cgtccttgtaaaataaagatttttcaggattgccccc 36174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 8153 - 8195
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||| |||||| |||| ||||||||||    
T  8153 agattccgtccttgtaaaatgaagatttttcacgattgccccc 8195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 15735 - 15777
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||| |||||| |||| ||||||||||    
T  15735 agattccgtccttgtaaaatgaagatttttcacgattgccccc 15777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 25687 - 25729
Alignment:
Q  186 agattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||| |||||| |||| ||||||||||    
T  25687 agattccgtccttgtaaaatgaagatttttcacgattgccccc 25729  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 51450 - 51487
Alignment:
Q  134 cccctgtaatatagggcacttttgattttatcccctgt 171  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  51450 cccctgtaatatagtgcacttttgattttagcccctgt 51487  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 20908 - 20952
Alignment:
Q  184 ttagattccgtccttgtaaaataaagattcttcaggattgccccc 228  Q
    |||||||||||||||||||||| |||| | |||| ||||||||||    
T  20908 ttagattccgtccttgtaaaatgaagaattttcacgattgccccc 20952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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