View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_53 (Length: 239)
Name: NF11133_low_53
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28902380 - 28902602
Alignment:
| Q |
1 |
ttgtctagatggttatctttaaaacatttctttttcgttggttatcttacttgtgtttgatgagtgtttgtttcttgaagaaaaaggaaatgaatgttgt |
100 |
Q |
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| T |
28902380 |
ttgtctagatggttatctttaaaacatttctttttagttggttatcttacttgtgtttaatgagtgtttgtttcttgaagaaaaaggaaatgaatgttgt |
28902479 |
T |
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| Q |
101 |
caagcattgcttgataaaaatgaatgaacatttgtaaaacacaagctatgttttatcaagttaatttcataattttttcacaaaacaaacgttcatctca |
200 |
Q |
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| T |
28902480 |
caagcattgcttggtaaaaatgaatgaacatttgtaaaacacaagctatgttttatcaagttaatttcataattttttcacaaaacaaacgttcatctca |
28902579 |
T |
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| Q |
201 |
cttcttactttactagttcgtcg |
223 |
Q |
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| T |
28902580 |
cttcttactttactagttcgtcg |
28902602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 28902333 - 28902267
Alignment:
| Q |
41 |
gttatcttacttgtgtttgatgagtgtttgtttcttgaagaaaaaggaaatgaatgttgtcaagcat |
107 |
Q |
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| T |
28902333 |
gttatcttagttgtgtttgatgagcgtttgttttatgaagaaaaagaaaatgaaggttgtaaagcat |
28902267 |
T |
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