View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_54 (Length: 238)
Name: NF11133_low_54
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24693819 - 24693597
Alignment:
| Q |
1 |
tcacaatattctcctttgtcgtatatggcaggaaaaatttgctcttctgctacttgtaaaataatttgttcatctctaggttggattttagtgctttgtt |
100 |
Q |
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| T |
24693819 |
tcacaatattctcctttgtcgtatatggcaggaaaaatttgctcttctgctacttgtaaaataatttgttcatctctaggttggattttagtgctttgtt |
24693720 |
T |
|
| Q |
101 |
gattcatggggtaacttgaccccttaatagaatcattgggatcacataagtaagaacaaccttccatacaaataccacaatgttctccttcatcatctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24693719 |
gattcatggggtaacttgaccccttaatagaatcattggggtcacataagtaagaacaatcttccatacaaataccacaatgttctccttcatcatctag |
24693620 |
T |
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| Q |
201 |
agtagcaaaaataaactcctttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
24693619 |
agtagcaaaaataaactcctttg |
24693597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 24479266 - 24479322
Alignment:
| Q |
167 |
tacaaataccacaatgttctccttcatcatctagagtagcaaaaataaactcctttg |
223 |
Q |
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||||| || |||||| ||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
24479266 |
tacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttg |
24479322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 41369811 - 41370007
Alignment:
| Q |
28 |
gcaggaaaaatttgctcttctgctacttgtaaaataatttgttcatctctaggttggattttagtgctttgttgattcatggggtaacttgaccccttaa |
127 |
Q |
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|||||||||||||| ||||||||| ||||| ||||| ||| || |||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
41369811 |
gcaggaaaaatttgttcttctgctgcttgtgaaatattttttttatctctagcttggattttcatgctcctttgattcatggggtaacttgaccccttaa |
41369910 |
T |
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| Q |
128 |
tagaatcattgggatcacataagtaagaacaaccttccatacaaataccacaatgttctccttcatcatctagagtagcaaaaataaactcctttgt |
224 |
Q |
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|||||||||||| | || | ||||||||| ||||||||||||||||||| | |||| |||| | ||||||||||| || ||||||||||||||| |
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| T |
41369911 |
cagaatcattggggtaactgaggtaagaacagtcttccatacaaataccacagtattctacttcgttatctagagtaggaagaataaactcctttgt |
41370007 |
T |
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