View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_55 (Length: 237)
Name: NF11133_low_55
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 40945685 - 40945908
Alignment:
| Q |
16 |
aaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaa |
115 |
Q |
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| T |
40945685 |
aaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaa |
40945784 |
T |
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| Q |
116 |
cggtgctcctcttcctatttgttaacnnnnnnngttattttataaaatgctttat---ttgtattttatacaagtgtatcaataatcatatagtttattc |
212 |
Q |
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||||||||||||||| |||||||||| |||| || |||||||||||| |||||||||||||||||||||||| |||||| ||| || ||| |
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| T |
40945785 |
cggtgctcctcttccaatttgttaactttgttggttaattatgaaaatgctttatttgttgtattttatacaagtgtatcaaaaatcatgtaggtttttc |
40945884 |
T |
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| Q |
213 |
gtgcctttaacaaattaatatgga |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
40945885 |
aagcctttaacaaattaatatgga |
40945908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 40959650 - 40959854
Alignment:
| Q |
16 |
aaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959650 |
aaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaa |
40959749 |
T |
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| Q |
116 |
cggtgctcctcttcctatttgttaacnnnnnnngttattttataaaatgctttatttgtattttatacaagtgtatcaataatcatatagtttattcgtg |
215 |
Q |
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||||||||||||||| |||||||||| |||| || |||||| |||||||||| | |||||||||||| |||||||||| ||| || ||| || |
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| T |
40959750 |
cggtgctcctcttccaatttgttaactttgttggttaattctgaaaatgttttatttgta-tctatacaagtgtaacaataatcat-taggtttttcatg |
40959847 |
T |
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| Q |
216 |
cctttaa |
222 |
Q |
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||||||| |
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| T |
40959848 |
cctttaa |
40959854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 28183714 - 28183610
Alignment:
| Q |
36 |
gaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgcttgggagagtggaacggtgctcctcttcctattt |
135 |
Q |
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|||| ||| |||||||| |||||||||||||| || || ||||| ||||||||||| | ||||| | |||||||||||||| ||||||||||| |||| |
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| T |
28183714 |
gaagagtgcgacaaattgttcacagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcctcttccaattt |
28183615 |
T |
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| Q |
136 |
gttaa |
140 |
Q |
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||||| |
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| T |
28183614 |
gttaa |
28183610 |
T |
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