View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_57 (Length: 237)
Name: NF11133_low_57
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 3223065 - 3223271
Alignment:
| Q |
16 |
agagatcatgtaggagaaaaatagcatatgtcacattggaccatttgcacgatctgactatggctgtgatctctagcattgagatgtccatagcttccgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3223065 |
agagatcatgtaggagaaaaatagcatatgtcacattggaccatttgcacgatctgactatggctgtgatctctagcattgagatgtccatagcttccgt |
3223164 |
T |
|
| Q |
116 |
gacatctcatcaacatccaaaaaatcaattatttgacaatgagtataaaaatacatttttataattaataatgtgacnnnnnnnnagcaaataaatgatg |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3223165 |
gacacctcatcaacatccaaaaaatcaattatttgacaatgagtataaaaatacatttttataattaataatgtgacttttttttagcaaataaatgatg |
3223264 |
T |
|
| Q |
216 |
taactat |
222 |
Q |
| |
|
||||||| |
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| T |
3223265 |
taactat |
3223271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 3282362 - 3282532
Alignment:
| Q |
16 |
agagatcatgtaggagaaaaatagcatatgtcacattggaccatttgcacgatctgactatggctgtgatctctagcattgagatgtccatagcttccgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3282362 |
agagatcatgtaggagaaaaatagcatatgtctcattggaccatttgcacgatctgactatggctgtgatctctagcattgagatgtccatagcttccat |
3282461 |
T |
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| Q |
116 |
gacatctcatcaacatccaaaaaatcaattatttgacaatgagtataaaaatacat-ttttataattaataa |
186 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3282462 |
gacacctcatcaacat-caaaaaatcaattatttgacaatgagtataaaaatacataatttataattaataa |
3282532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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