View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_60 (Length: 228)
Name: NF11133_low_60
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 6555936 - 6556119
Alignment:
| Q |
7 |
aagaactcagcttcttaaaagtgaaagttgcatttcaaaaaataaactatgggattataatcattgattggaaaatcaacaattcttcaaaagtgtaagt |
106 |
Q |
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| T |
6555936 |
aagaactcagcttcttaaaagtgaaagtttcatttcaaaaaataaactatgggattataatcattgatcggaaaatcaacaattcttcaaaagtgtaagt |
6556035 |
T |
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| Q |
107 |
ttcattttttatgagttaagattttaaaaccaacatttgaaggtgctctttcttgtgaacagtacaatgtaatcaaactagtat |
190 |
Q |
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| T |
6556036 |
ttcattttttatgagttaagattttaaaaccaacatttgaaggtgctctttcttgtgaacagtacaatgtaatcaaactagtat |
6556119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 49056664 - 49056562
Alignment:
| Q |
11 |
actcagcttcttaaaagtgaaagttgcatttcaaaaaataaactatgggattataatcattgatt-ggaaaatcaacaattcttcaaaagtgtaagtttc |
109 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
49056664 |
actcagcttcataaaagtgaaatttgcatttcaaaaaataaactatggaattataataattgattgggaaaatcaacgattcttcaaaagtgtaagtttc |
49056565 |
T |
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| Q |
110 |
att |
112 |
Q |
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||| |
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| T |
49056564 |
att |
49056562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 15988416 - 15988450
Alignment:
| Q |
193 |
tcgtgtgcttaactagttggtaaggacaatgcata |
227 |
Q |
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| T |
15988416 |
tcgtgagcttaactagttggtaaggacaatgcata |
15988450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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