View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_62 (Length: 222)
Name: NF11133_low_62
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 43340248 - 43340053
Alignment:
| Q |
14 |
acagaaccagccactaccaacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtg |
113 |
Q |
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| T |
43340248 |
acagaaccagccactaccaacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtg |
43340149 |
T |
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| Q |
114 |
ttcaatccct----ccctacacataaaccaagaccaagataggcttctgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaat |
205 |
Q |
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| T |
43340148 |
ttcaatccctccctccctacacataaaccaagaccaagataggctcttgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaat |
43340053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 1014699 - 1014818
Alignment:
| Q |
65 |
gatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtgttcaatccctccctacacataaaccaagaccaagataggcttctgatatgg |
164 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| | |
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| T |
1014699 |
gatacaaacaagtggattcaaccaccaataggatcatcgaaagttcgtgttgaacccctccctacacataaaccaagaccaagataggtgtttgatagga |
1014798 |
T |
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| Q |
165 |
tcaaccacctctaaataatt |
184 |
Q |
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| T |
1014799 |
tcaaccacctctaaacaatt |
1014818 |
T |
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